View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_high_8 (Length: 285)
Name: NF2387_high_8
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 269
Target Start/End: Complemental strand, 37811550 - 37811290
Alignment:
| Q |
10 |
agatgaacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaa-tacta |
108 |
Q |
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| T |
37811550 |
agatgaacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaaatacta |
37811451 |
T |
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| Q |
109 |
aaacctgtattggatgtcgatcctgaatctaatcctcatttcgacgagagaatgggtatcgacaaaacaaagctcctgcggcctaagaggatgaattttc |
208 |
Q |
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| T |
37811450 |
aaacctgtattggatgttaatcctgaatctaatcctcattttgatgaaagaatgggtatcgacaaaacaaagctcctgcggcctaagaggatgaattttc |
37811351 |
T |
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| Q |
209 |
tgtttgtggaggaaggaaaatggtcaagagatgctgaatcaataaaattgaagagtgaatt |
269 |
Q |
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| T |
37811350 |
tgtttgtggaggaaggaaaatggtcaagagatgctgaatcaataaaatggaagagtaaatt |
37811290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 52355501 - 52355305
Alignment:
| Q |
66 |
aggtcaacattaataaacagaagaaagatgcatttgaa-tactaaaacctgtattggatgtcgatcctgaatctaatcctcatttcgacgagagaatggg |
164 |
Q |
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| T |
52355501 |
aggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattggatgtcgatcctgaatctaatcctcattttgatgagagaatggg |
52355402 |
T |
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| Q |
165 |
tatcgacaaaacaaagctcctgcggcctaagaggatgaattttctgtttgtggaggaaggaaaatggtcaagagatgctgaatcaataaaattgaag |
261 |
Q |
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| T |
52355401 |
tatcgacaaaacaaagctcctgcggcctaagaggatgaattttctgtttgtggaggaaggaaaatggtcaagagacgctgaatcaataaaattgaag |
52355305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 52355646 - 52355587
Alignment:
| Q |
10 |
agatgaacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggt |
69 |
Q |
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| T |
52355646 |
agatgaacatggaaatgttgttaatgtgactaagccaagcaaccttagcacattaaaggt |
52355587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 180
Target Start/End: Complemental strand, 17209030 - 17208860
Alignment:
| Q |
10 |
agatgaacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaataaacagaagaaagatgcatttgaa-tacta |
108 |
Q |
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| T |
17209030 |
agatgaacatggaaatgttgttaatgtaactaagccaagcaac-ttagcacattaaaggtcatcattaataaacataagaaagatgcatttgaaatacta |
17208932 |
T |
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| Q |
109 |
aaacctgtattggatgtcgatcctgaatctaatcctcatttcgacgagagaatgggtatcgacaaaacaaag |
180 |
Q |
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| T |
17208931 |
aaacctgtattggatgtcgatcctgaatctaatcctcatttcgacgagagaatgggtatcgacaaaacaaag |
17208860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 17200092 - 17199985
Alignment:
| Q |
10 |
agatgaacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaataaacagaagaaagatgcatttg-aatacta |
108 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| |
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| T |
17200092 |
agatgaacatggaaattttgttaatgtaactaagccaagcaaccttagc-------agctcaacattaataaacataagaaagatgcatttgaaatacta |
17200000 |
T |
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| Q |
109 |
aaacctgtattggat |
123 |
Q |
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| T |
17199999 |
aaacctgtattggat |
17199985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 17199986 - 17199920
Alignment:
| Q |
203 |
attttctgtttgtggaggaaggaaaatggtcaagagatgctgaatcaataaaattgaagagtgaatt |
269 |
Q |
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| T |
17199986 |
attttctgtttgtggaggatggaaaatggtcaagagatgctgaatcaataaaattgaagagtgaatt |
17199920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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