View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_low_11 (Length: 275)
Name: NF2387_low_11
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5947400 - 5947207
Alignment:
| Q |
1 |
tttgttataaatgttagtagatagattaatattattttcttcttcgactagatttgaacccataaaataatttcttctctttcatttaaatttgaactat |
100 |
Q |
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| T |
5947400 |
tttgttataaatgttagtagatagattaatatt---ttcttcttcaactagatttaaacccataaaataatttcttctctttcatttaaatttgaactat |
5947304 |
T |
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| Q |
101 |
aaatatattcaagcaaaatt-tcaaaaaacaatcaaatatgtgagagtgaatttattcaaaatcaattttagttaccttagaatcaaacacactaaa |
196 |
Q |
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| T |
5947303 |
aaatatattcaagcaaaattaaaaaaaaacaatcaaacatgtgagaatgaatttattcaaaatcaattttagttaccttagaatcaaacacactaaa |
5947207 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 54457272 - 54457215
Alignment:
| Q |
209 |
gtcaagtagcatagcggctagagaaattcacc----aggtgaattaatgtggtgtccg |
262 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
54457272 |
gtcaagtagcctagcggctagagaaattcaccttaaaggtgaataaatggggtgtccg |
54457215 |
T |
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