View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2387_low_13 (Length: 258)

Name: NF2387_low_13
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2387_low_13
NF2387_low_13
[»] chr5 (4 HSPs)
chr5 (135-258)||(36436923-36437046)
chr5 (29-234)||(36446314-36446518)
chr5 (27-239)||(36412398-36412609)
chr5 (29-234)||(36468719-36468924)
[»] chr1 (1 HSPs)
chr1 (113-170)||(45640797-45640855)
[»] chr4 (1 HSPs)
chr4 (77-123)||(47397874-47397920)
[»] chr8 (2 HSPs)
chr8 (94-143)||(28205809-28205858)
chr8 (90-147)||(43140624-43140680)
[»] chr7 (2 HSPs)
chr7 (77-122)||(22106768-22106813)
chr7 (77-122)||(40529538-40529583)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 135 - 258
Target Start/End: Complemental strand, 36437046 - 36436923
Alignment:
Q  135 aaatgtatctaatctataatatgactagatacattatgaacctacaaagtaatgaattaatacacacaagctaccttctcaactgccaagtgaaggtccc 234  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  36437046 aaatgtatctgatctataatatgactagatacattatgaacctacaaagtaatgaattaatacacaagagctaccttctcaactgccaagtgaaggtccc 36436947  T
Q  235 tacatttccctccttccctccatt 258  Q
    ||||| ||||||||||||||||||    
T  36436946 tacatctccctccttccctccatt 36436923  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 36446518 - 36446314
Alignment:
Q  29 tatcaaaatcatcaaatagctattttagttcaaactttatagatatgtatacaccctcttatcattattataaacaaaatttcatttttcagattaattg 128  Q
    |||| ||||||||||| | ||||||||||| ||| |||||||||||  ||||||  |   |||| ||||||||| ||||||||||||||  |||||||||    
T  36446518 tatcgaaatcatcaaacaactattttagtttaaaatttatagatat--atacactattcgatcactattataaataaaatttcatttttttgattaattg 36446421  T
Q  129 cataataaatgtatctaatctataatatga-ctagatacattatgaacctacaaagtaatgaattaatacacacaagctaccttctcaactgccaagtga 227  Q
     |||| | |||||| ||  |||| |||| | ||||||||||| |||| ||| |||||||||||||||||||||| ||||||| |||||||| |||||| |    
T  36446420 tataaaagatgtatatagcctatcatataaactagatacattgtgaatctaaaaagtaatgaattaatacacactagctaccatctcaactaccaagtaa 36446321  T
Q  228 aggtccc 234  Q
    |||||||    
T  36446320 aggtccc 36446314  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 239
Target Start/End: Complemental strand, 36412609 - 36412398
Alignment:
Q  27 gatatcaaaatcatcaaatagctattttagttcaaactttatagatatgtatacaccctcttatcattattataaacaaaatttcatttttcagattaat 126  Q
    ||||| |||||||||||| |  |||||||||| ||| |||||| ||||  ||||| | ||  || ||||||||| | ||||||| |||||| ||||||||    
T  36412609 gatattaaaatcatcaaacaattattttagttaaaaatttataaatat--atacatcatccgattattattatacataaaattttattttttagattaat 36412512  T
Q  127 tgcataataaatgtatctaatctataatat-gactagatacattatgaacctacaaagtaatgaattaatacacacaagctaccttctcaactgccaagt 225  Q
    ||||||| | ||||||||  || ||| ||| ||| |  ||||||||||| ||| |||| ||||||||| ||||||| ||||||||||||||||  |||||    
T  36412511 tgcataaaagatgtatctggtcgatattatagaccatgtacattatgaaactaaaaagcaatgaattattacacactagctaccttctcaactagcaagt 36412412  T
Q  226 gaaggtccctacat 239  Q
    ||| ||||||||||    
T  36412411 gaatgtccctacat 36412398  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 36468924 - 36468719
Alignment:
Q  29 tatcaaaatcatcaaatagctattttagttcaaactttatagatatgtatacaccctcttatcattattataaacaaaatttcatttttca-gattaatt 127  Q
    |||| ||||||||||| | |||| |||||| ||| |||||||||||  ||||||  |   |||| ||||||||| ||||||||||||||   ||||||||    
T  36468924 tatcgaaatcatcaaacaactatattagtttaaaatttatagatat--atacactattcgatcactattataaataaaatttcattttttttgattaatt 36468827  T
Q  128 gcataataaatgtatctaatctataatatga-ctagatacattatgaacctacaaagtaatgaattaatacacacaagctaccttctcaactgccaagtg 226  Q
    | |||| | |||||| || | |||||||| | |||||||||||  ||| ||| |||||||||||||||||||||| ||||||| |||||||| ||||||     
T  36468826 gtataaaagatgtatatagtttataatataaactagatacattgagaatctaaaaagtaatgaattaatacacactagctaccatctcaactaccaagta 36468727  T
Q  227 aaggtccc 234  Q
    ||||||||    
T  36468726 aaggtccc 36468719  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 45640797 - 45640855
Alignment:
Q  113 tttttcagattaattgcataataaatgtatctaatctataatat-gactagatacatta 170  Q
    ||||| |||||||||| |||| ||||||||||||||||||||||  |||||||||||||    
T  45640797 ttttttagattaattgaataacaaatgtatctaatctataatatacactagatacatta 45640855  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 47397874 - 47397920
Alignment:
Q  77 atacaccctcttatcattattataaacaaaatttcatttttcagatt 123  Q
    ||||||||||| |||||||||||||||| ||||| |||||| |||||    
T  47397874 atacaccctctgatcattattataaacagaattttattttttagatt 47397920  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 28205809 - 28205858
Alignment:
Q  94 tattataaacaaaatttcatttttcagattaattgcataataaatgtatc 143  Q
    ||||||||||||||||| |||||||||||  |||| ||||| ||||||||    
T  28205809 tattataaacaaaatttaatttttcagatacattgaataattaatgtatc 28205858  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 43140680 - 43140624
Alignment:
Q  90 tcattattataaacaaaatttcatttttcagattaattgcataataaatgtatctaat 147  Q
    |||||||||||||||||| ||||||||| ||| || ||| ||||| ||||||||||||    
T  43140680 tcattattataaacaaaacttcattttttaga-tacttgaataattaatgtatctaat 43140624  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 22106813 - 22106768
Alignment:
Q  77 atacaccctcttatcattattataaacaaaatttcatttttcagat 122  Q
    ||||||||||| |||| || ||||||||||||||||||||| ||||    
T  22106813 atacaccctctgatcactaatataaacaaaatttcattttttagat 22106768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 40529538 - 40529583
Alignment:
Q  77 atacaccctcttatcattattataaacaaaatttcatttttcagat 122  Q
    ||||||||||| |||| || ||||||||||||||||||||| ||||    
T  40529538 atacaccctctgatcactaatataaacaaaatttcattttttagat 40529583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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