View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_low_16 (Length: 239)
Name: NF2387_low_16
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_low_16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 36243586 - 36243790
Alignment:
| Q |
19 |
gcatgcatcttccatgtttgtcagattcacacgacatatgattaagagaagagtgattcacatgatgcatgatacgaaggatctgttgaatgagtaagaa |
118 |
Q |
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| T |
36243586 |
gcatgcatcttccatgtttgtcagattcacacgacatatgat---------------tcacatgatgcatgatacgaaggatctgttgaatgagtaagaa |
36243670 |
T |
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| Q |
119 |
acagaaatgtctagcactacactcactcaaaccaaactcatgacagcctttgagtcatactcaatgtcaatagctctaaaatatcgatcaaatgtcaact |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36243671 |
acagaaatgtctagcactacactcattcaaaccaaactcatgacagcctttgagtcatactcaatgtcaatagctctaaaatatcgatcaaatgtcaact |
36243770 |
T |
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| Q |
219 |
tcagggcctttgacggtaacc |
239 |
Q |
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||| |||| |||||||||||| |
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| T |
36243771 |
tca-ggcccttgacggtaacc |
36243790 |
T |
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