View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_low_3 (Length: 612)
Name: NF2387_low_3
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 116 - 596
Target Start/End: Complemental strand, 14211244 - 14210755
Alignment:
| Q |
116 |
atgtatgtccacaggtcctaactcaattggtaaaaatatcgaaattgttagacataatactataaaatatatacatatgtgtgaatttctaatgactatt |
215 |
Q |
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| T |
14211244 |
atgtatgtccacaagtcctaacttaattggtaaaaatgtcaaaattgttagacatgatactataaaatacatacatatgtgtgaatttctaatgactatt |
14211145 |
T |
|
| Q |
216 |
atcatttcagatttgtataaaagnnnnnnnnn------tcactgtatagctagtagttggttggaagagtacttaccctacaagagcactaaagaaaagc |
309 |
Q |
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|| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14211144 |
attatttaagatttgtataaaagaaaaaaaaaaaaaaatcactgtatagctagtagttggttggaagagtacttaccctacaagagcactaaagaaaagc |
14211045 |
T |
|
| Q |
310 |
agacatataatatgaccatttatcttgctttccctgtaaaatataaaattattnnnnnnnnnn-tcaactagaaaatcatcaaatcttatcttatccttt |
408 |
Q |
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| T |
14211044 |
agacatataatatgaccatttatcttgctttccctgtaaaatataaaattattaaaaaaaaaaatcaactagaaaatcatcaaatcttatcttatccttt |
14210945 |
T |
|
| Q |
409 |
acaaatgtaagtgctaaaatggaagagagtgagtttttcatgtctatatctct--attgatgcattaggtaaatgaggggtcttattatcaaaattagtg |
506 |
Q |
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| T |
14210944 |
acaaatgtaagtgctaaaatgcaatagagtggggttttcatgtctatgtctctctattgatgtattaagtaaatgaggggtagtattatcaaaattagtg |
14210845 |
T |
|
| Q |
507 |
actatcgatagagatactaaacaaaattttaatttgacaaaattatgtgaaatttcaatatacaaatagggaattgcccttctttcatct |
596 |
Q |
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| T |
14210844 |
actctcgatagagatactaaacaaaattttaatttgacaaaattatgtgaaatttcaatatagaaatagggaattgcccttcttccatct |
14210755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14211383 - 14211271
Alignment:
| Q |
1 |
attgtgtgagtgttgctctgaaatacattcataaaatcttaatttagtggctactacttcaaacaacttcaatatatacctagctaaatgtatgttgact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14211383 |
attgtgtgagtgttgctctgaaatacattcataaaatcttaatttagtggccactacttcaaacaacttcaatatatacctagctaaatgtatgttgact |
14211284 |
T |
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| Q |
101 |
cctcgaatttgat |
113 |
Q |
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| T |
14211283 |
cctcgaatttgat |
14211271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 5841609 - 5841565
Alignment:
| Q |
121 |
tgtccacaggtcctaactcaattggtaaaaatatcgaaattgttag |
166 |
Q |
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| T |
5841609 |
tgtccacaagtcctagctcaattggt-aaaatatcgaaattgttag |
5841565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 43565820 - 43565787
Alignment:
| Q |
134 |
taactcaattggtaaaaatatcgaaattgttaga |
167 |
Q |
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| T |
43565820 |
taactcaattgataaaaatatcgaaattgttaga |
43565787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 46734238 - 46734202
Alignment:
| Q |
130 |
gtcctaactcaattggtaaaaatatcgaaattgttag |
166 |
Q |
| |
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|||||||||||||||| |||||| ||||||||||||| |
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| T |
46734238 |
gtcctaactcaattggcaaaaatgtcgaaattgttag |
46734202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 45178870 - 45178837
Alignment:
| Q |
132 |
cctaactcaattggtaaaaatatcgaaattgtta |
165 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
45178870 |
cctaactcaactggtaaaaatatcgaaattgtta |
45178837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 30703097 - 30703133
Alignment:
| Q |
130 |
gtcctaactcaattggtaaaaatatcgaaattgttag |
166 |
Q |
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|||||| ||||||||| |||||||||||||||||||| |
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| T |
30703097 |
gtcctagctcaattggcaaaaatatcgaaattgttag |
30703133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 39948532 - 39948568
Alignment:
| Q |
130 |
gtcctaactcaattggtaaaaatatcgaaattgttag |
166 |
Q |
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|||||| ||||| |||||||||||||||||||||||| |
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| T |
39948532 |
gtcctagctcaactggtaaaaatatcgaaattgttag |
39948568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 54923492 - 54923528
Alignment:
| Q |
130 |
gtcctaactcaattggtaaaaatatcgaaattgttag |
166 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||||| |
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| T |
54923492 |
gtcctaactcaactggtaaaaatgtcgaaattgttag |
54923528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 38575095 - 38575059
Alignment:
| Q |
130 |
gtcctaactcaattggtaaaaatatcgaaattgttag |
166 |
Q |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
38575095 |
gtcctaactcaactcgtaaaaatatcgaaattgttag |
38575059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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