View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2387_low_4 (Length: 587)

Name: NF2387_low_4
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2387_low_4
NF2387_low_4
[»] chr7 (31 HSPs)
chr7 (406-522)||(5691421-5691539)
chr7 (132-191)||(12171237-12171296)
chr7 (134-191)||(8571377-8571434)
chr7 (109-193)||(8571449-8571529)
chr7 (109-191)||(2297326-2297404)
chr7 (134-191)||(2360444-2360501)
chr7 (109-191)||(46648340-46648418)
chr7 (116-191)||(16777887-16777958)
chr7 (134-191)||(6585991-6586048)
chr7 (134-191)||(10422896-10422953)
chr7 (134-191)||(28285477-28285534)
chr7 (135-191)||(46648716-46648772)
chr7 (132-191)||(2360535-2360594)
chr7 (134-191)||(8595235-8595292)
chr7 (134-191)||(26824901-26824958)
chr7 (134-193)||(10422801-10422860)
chr7 (116-191)||(12171316-12171387)
chr7 (109-191)||(38238778-38238857)
chr7 (136-185)||(2297421-2297470)
chr7 (109-191)||(8561177-8561255)
chr7 (106-188)||(43813123-43813201)
chr7 (116-191)||(8595142-8595213)
chr7 (134-188)||(22281892-22281946)
chr7 (116-191)||(23797343-23797414)
chr7 (120-187)||(34840613-34840676)
chr7 (134-191)||(9555348-9555405)
chr7 (134-191)||(26825006-26825063)
chr7 (109-191)||(34703510-34703588)
chr7 (162-191)||(40416901-40416930)
chr7 (481-529)||(44452038-44452086)
chr7 (140-184)||(46944031-46944075)
[»] chr4 (15 HSPs)
chr4 (109-191)||(28702056-28702134)
chr4 (134-191)||(28702149-28702206)
chr4 (109-184)||(21859484-21859555)
chr4 (109-184)||(21915347-21915418)
chr4 (133-191)||(34134590-34134648)
chr4 (132-191)||(17655046-17655105)
chr4 (134-191)||(17655150-17655207)
chr4 (109-191)||(55087778-55087856)
chr4 (109-191)||(10308230-10308313)
chr4 (109-143)||(46462447-46462481)
chr4 (109-191)||(5418582-5418660)
chr4 (162-191)||(21884135-21884164)
chr4 (134-190)||(3511797-3511853)
chr4 (132-188)||(21859568-21859624)
chr4 (132-188)||(21915431-21915487)
[»] chr1 (25 HSPs)
chr1 (109-191)||(47753-47831)
chr1 (109-191)||(11989376-11989454)
chr1 (134-191)||(29302059-29302116)
chr1 (134-191)||(29302153-29302210)
chr1 (132-191)||(47681-47740)
chr1 (134-191)||(11989304-11989361)
chr1 (134-191)||(13043797-13043854)
chr1 (134-191)||(35156331-35156388)
chr1 (116-191)||(39075844-39075915)
chr1 (134-191)||(13043716-13043773)
chr1 (134-191)||(35156260-35156317)
chr1 (116-191)||(39075982-39076053)
chr1 (109-191)||(8258010-8258088)
chr1 (134-191)||(27936759-27936816)
chr1 (140-191)||(3384218-3384269)
chr1 (140-191)||(14418151-14418202)
chr1 (134-192)||(32914650-32914708)
chr1 (116-187)||(38834610-38834677)
chr1 (134-172)||(39075931-39075969)
chr1 (109-191)||(6758541-6758619)
chr1 (109-191)||(31008254-31008332)
chr1 (162-191)||(31008375-31008404)
chr1 (138-191)||(33939389-33939442)
chr1 (481-533)||(39807585-39807637)
chr1 (138-194)||(44349922-44349978)
[»] chr5 (27 HSPs)
chr5 (132-191)||(25772241-25772300)
chr5 (134-191)||(7724955-7725012)
chr5 (134-191)||(7725042-7725099)
chr5 (134-191)||(20019836-20019893)
chr5 (109-191)||(25772149-25772228)
chr5 (134-191)||(1996842-1996899)
chr5 (134-191)||(1996936-1996993)
chr5 (134-191)||(291886-291943)
chr5 (134-191)||(27314470-27314527)
chr5 (109-191)||(27314542-27314620)
chr5 (134-191)||(29232892-29232949)
chr5 (134-188)||(16899775-16899829)
chr5 (134-191)||(291785-291842)
chr5 (109-191)||(1100124-1100202)
chr5 (109-191)||(26300106-26300184)
chr5 (132-193)||(39035473-39035534)
chr5 (109-191)||(13311170-13311247)
chr5 (109-191)||(25037126-25037206)
chr5 (111-191)||(25408612-25408688)
chr5 (116-187)||(1098701-1098768)
chr5 (138-192)||(26141749-26141803)
chr5 (109-188)||(42013820-42013895)
chr5 (162-191)||(6763692-6763721)
chr5 (139-188)||(7330070-7330119)
chr5 (109-175)||(16899698-16899760)
chr5 (162-191)||(41180208-41180237)
chr5 (132-180)||(39035403-39035451)
[»] chr3 (13 HSPs)
chr3 (134-191)||(40470506-40470563)
chr3 (134-191)||(22456268-22456325)
chr3 (109-191)||(40470413-40470491)
chr3 (135-191)||(26143537-26143593)
chr3 (481-531)||(22853895-22853945)
chr3 (134-191)||(43818857-43818914)
chr3 (109-144)||(4980340-4980375)
chr3 (106-189)||(30578286-30578365)
chr3 (134-187)||(17109263-17109316)
chr3 (162-191)||(38455160-38455189)
chr3 (138-191)||(38677560-38677613)
chr3 (142-191)||(52168278-52168327)
chr3 (140-192)||(17109332-17109384)
[»] chr8 (18 HSPs)
chr8 (109-189)||(9878982-9879058)
chr8 (134-188)||(13029402-13029456)
chr8 (116-191)||(42749050-42749121)
chr8 (134-191)||(17087350-17087407)
chr8 (134-186)||(17087435-17087487)
chr8 (134-191)||(92926-92983)
chr8 (134-191)||(9878910-9878967)
chr8 (134-191)||(92838-92895)
chr8 (134-175)||(13029338-13029379)
chr8 (134-191)||(24287780-24287837)
chr8 (134-191)||(40640273-40640330)
chr8 (417-461)||(9004995-9005039)
chr8 (134-181)||(9232538-9232586)
chr8 (140-191)||(1739659-1739710)
chr8 (116-191)||(33070160-33070231)
chr8 (109-191)||(9056088-9056166)
chr8 (138-191)||(33070257-33070310)
chr8 (481-529)||(32133692-32133740)
[»] chr2 (17 HSPs)
chr2 (104-191)||(20057168-20057251)
chr2 (147-191)||(4817092-4817136)
chr2 (134-191)||(31102037-31102094)
chr2 (140-191)||(43426722-43426773)
chr2 (109-191)||(5574177-5574255)
chr2 (134-191)||(23992370-23992427)
chr2 (418-529)||(431630-431744)
chr2 (134-188)||(23992464-23992518)
chr2 (134-191)||(20057101-20057158)
chr2 (138-191)||(26234116-26234169)
chr2 (109-191)||(41805269-41805347)
chr2 (134-191)||(41805362-41805419)
chr2 (486-534)||(3666430-3666478)
chr2 (417-457)||(11385447-11385487)
chr2 (159-191)||(37195047-37195079)
chr2 (417-469)||(37284945-37284997)
chr2 (151-191)||(37980749-37980789)
[»] chr6 (8 HSPs)
chr6 (109-194)||(21506530-21506611)
chr6 (120-191)||(13462928-13462995)
chr6 (138-192)||(14310613-14310667)
chr6 (162-191)||(2988794-2988823)
chr6 (138-191)||(31398318-31398371)
chr6 (109-191)||(32254888-32254966)
chr6 (111-143)||(4808299-4808331)
chr6 (109-190)||(30460680-30460757)
[»] scaffold0024 (1 HSPs)
scaffold0024 (140-191)||(120239-120290)
[»] scaffold0536 (1 HSPs)
scaffold0536 (134-191)||(4038-4095)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 406 - 522
Target Start/End: Complemental strand, 5691539 - 5691421
Alignment:
Q  406 ttttttaggagcactctttaaatattctacatctagtaattattttttaaaaatgttaattttt--acttcaaacttactttattacataaactttcgta 503  Q
    |||||| ||| ||||||||||||||| ||| | || |||||||| |||||||||||||| ||||  |||||||||||||||||||||| |||||||| ||    
T  5691539 ttttttgggaacactctttaaatattatacgtttaataattattctttaaaaatgttaaattttcaacttcaaacttactttattacacaaactttcata 5691440  T
Q  504 aaaaattaccatttaaaat 522  Q
    |||||||  ||||||||||    
T  5691439 aaaaattgtcatttaaaat 5691421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 12171296 - 12171237
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  12171296 ttatttaatgaatgaatctaaaaatcaaatttttgcttatattaatgaccggagggtgta 12171237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 8571434 - 8571377
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  8571434 atttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 8571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 8571449 - 8571529
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaag 193  Q
    ||||||||| |||||||||||||||    |||||||| || ||||||||||| |||||||||||||| |||||||||||||||||    
T  8571449 ataataaagtctacatacatcattt----aatgaatgaatttaaaaatcaaatttttgcttatattagtgaccggagggtgtaag 8571529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 2297404 - 2297326
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||| ||    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  2297404 ataataaagactgcatacgtc----atttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 2297326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 2360501 - 2360444
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  2360501 atttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 2360444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 46648418 - 46648340
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||    ||||||| |||||||||||||| |||||||||||||| |||| ||||| ||||    
T  46648418 ataataaagactacatacatcattta----atgaatgaatctaaaaatcaaatttttgcttatattagtgacaggaggatgta 46648340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 16777958 - 16777887
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||| | |||||||    |||||||| |||||||||||||||||| |||||||||||||||    
T  16777958 agactacatacatcatttaataaatgaat----ctaaaaattaaacttttgcttatattagtgaccggagggtgta 16777887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 6586048 - 6585991
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||    
T  6586048 atttaatgaatgaagctaaaaatcaaacttttgtttatattagtgaccggagggtgta 6585991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 10422896 - 10422953
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||    
T  10422896 atttaatgaatgaatctaaaaattaaatttttgcttatattagtgaccggagggtgta 10422953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 28285477 - 28285534
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||    
T  28285477 atttaatgaatgaatttaaaaatcaaatttttgcttatattaatgaccggaggatgta 28285534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 46648716 - 46648772
Alignment:
Q  135 tttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  46648716 tttaataaatgaatctaaaaatcaaaattttgcttatattagtgaccggagggtgta 46648772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 2360535 - 2360594
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||| |||| |||||||||||||| |||| ||||||||| |||||||||||||||    
T  2360535 ttatttaataaatgaatctaaaaatcaaatttttccttatattagtgaccggagggtgta 2360594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 8595235 - 8595292
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||  |||||||||| |||||||||||||| |||||||||||||||    
T  8595235 atttaatgaatgaattcaaaaatcaaatttttgcttatattagtgaccggagggtgta 8595292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 26824958 - 26824901
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||| ||| ||||||||||| || |||||||||||||||    
T  26824958 atttaatgaatgaatctaaaaattaaatttttgcttatactagtgaccggagggtgta 26824901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 10422860 - 10422801
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaag 193  Q
    |||||| ||||| |||||||||| ||| |||||||||||||| |||||||||| ||||||    
T  10422860 atttaacgaatgaatctaaaaattaaatttttgcttatattagtgaccggaggatgtaag 10422801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 12171316 - 12171387
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||| | |||||||    |||||||||||| |||| ||||||||| |||||||| ||||||    
T  12171316 agactacatacatcatttaataaatgaat----ctaaaaatcaaatttttacttatattagtgaccggatggtgta 12171387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 38238857 - 38238778
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaa-tcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| |||    ||||| ||||||||| | ||| |||||||||||||| |||||||||||||||    
T  38238857 ataataaagaccacatacatcattaatt----gaatgtatctaaaaagtgaaatttttgcttatattagtgaccggagggtgta 38238778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 2297421 - 2297470
Alignment:
Q  136 ttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggag 185  Q
    |||||||||| |||||||||||||||||||| |||||||| | |||||||    
T  2297421 ttaatgaatgaatctaaaaatcaaacttttgtttatattagtaaccggag 2297470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 8561177 - 8561255
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||    |||||||| |||| || ||||||||||| ||||  |||||||| |||| ||||||||||    
T  8561177 ataataaagactacatacat----tatttaataaatgaatttaaaaatcaaatttttatttatattagtgacaggagggtgta 8561255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 43813201 - 43813123
Alignment:
Q  106 tcaataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    |||||| || ||||||||||| ||||||||| |||||||    |||||||| ||| ||||||||||| || ||||||||||||    
T  43813201 tcaatattatagactacatacttcatttattgaatgaat----ctaaaaattaaatttttgcttataatagtgaccggagggt 43813123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 8595213 - 8595142
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||    ||||||| |||||||||  ||| |||| ||||||||  |||||||||||||||    
T  8595213 agactacatacatcattta----atgaatgaatctaaaaaataaattttttcttatatttgtgaccggagggtgta 8595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 22281892 - 22281946
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    |||||||||||  ||||||||  |||| ||||||||||| |||||||||||||||    
T  22281892 atttaatgaataaatctaaaatacaaagttttgcttataataatgaccggagggt 22281946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 23797414 - 23797343
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||    ||||||| ||||||||  |||| ||||||||||| || |||||| ||||||||    
T  23797414 agactacatacatcattta----atgaatgaatctaaaatgcaaaattttgcttataatagtgaccgaagggtgta 23797343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 34840676 - 34840613
Alignment:
Q  120 tacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggaggg 187  Q
    ||||||||||||||||| |||||||    |||||||   |||||||||||||| ||||||||||||||    
T  34840676 tacatacatcatttattgaatgaat----ctaaaaagtgaacttttgcttataataatgaccggaggg 34840613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 9555348 - 9555405
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||   ||| ||||||||||| |||||||||||| |||||    
T  9555348 atttaatgaatgaatctaaaatgtaaagttttgcttataataatgaccggagtgtgta 9555405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 26825006 - 26825063
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| || ||||||||||| |||| ||||||||| ||| |||||| ||||    
T  26825006 atttaatgaatgaatttaaaaatcaaatttttacttatattagtgatcggaggatgta 26825063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 34703510 - 34703588
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| | |||||||||| |||    ||||| |||||||||   || |||||||||||||| |||||||||||||||    
T  34703510 ataataaagaccatatacatcattaatt----gaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgta 34703588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 40416930 - 40416901
Alignment:
Q  162 ttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||||||    
T  40416930 ttttgcttatattaatgaccggagggtgta 40416901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 529
Target Start/End: Complemental strand, 44452086 - 44452038
Alignment:
Q  481 actttattacataaactttcgtaaaaaattaccatttaaaatcgttaac 529  Q
    ||||||||||| |||||||| ||||||||||| ||||||| || |||||    
T  44452086 actttattacacaaactttcataaaaaattactatttaaagtcattaac 44452038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 46944031 - 46944075
Alignment:
Q  140 tgaatggatctaaaaatcaaacttttgcttatattaatgaccgga 184  Q
    |||||| |||||||||| ||| |||| ||||||||||||||||||    
T  46944031 tgaatgtatctaaaaattaaatttttacttatattaatgaccgga 46944075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 28702134 - 28702056
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  28702134 ataataaagactacatacatcattta----atgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 28702056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 28702149 - 28702206
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||    
T  28702149 atttaatgaatgaacctaaaaatcaaacttttgcttatattagtgaccggagggtgta 28702206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 21859555 - 21859484
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccgga 184  Q
    ||||||||||||||||||||||||||    ||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  21859555 ataataaagactacatacatcattta----atgaatgaatctaaaaatcaaatttttgtttatattagtgaccgga 21859484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 21915418 - 21915347
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccgga 184  Q
    ||||||||||||||||||||||||||    ||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  21915418 ataataaagactacatacatcattta----atgaatgaatctaaaaatcaaatttttgtttatattagtgaccgga 21915347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 34134590 - 34134648
Alignment:
Q  133 tatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||| |||||||||||||| |||| ||||||||| |||||||| ||||||    
T  34134590 tatttaatgaatgaatctaaaaatcaaatttttacttatattagtgaccggaaggtgta 34134648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 17655105 - 17655046
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||| ||||||||| |||| ||||| |||||||| |||| ||||||||||    
T  17655105 ttatttaatgaatgaatctaaaaaccaaaattttgtttatattagtgactggagggtgta 17655046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 17655150 - 17655207
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||| ||||| |||| ||| ||| |||||||||||    
T  17655150 atttaatgaatgaatctaaaaatcaaatttttgtttatcttagtgatcggagggtgta 17655207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 55087778 - 55087856
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||  ||||||||||| |||    ||||| |||||||||| | | |||||||||||||| |||||||||||||||    
T  55087778 ataataaagaccgcatacatcattaatt----gaatgtatctaaaaattagatttttgcttatattagtgaccggagggtgta 55087856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 10308313 - 10308230
Alignment:
Q  109 ataataaagactacatacatcatttatttaa-tgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||| |||||||||| |||||| |||||| ||||||||   ||| |||||||||||  | |||||| ||||||||    
T  10308313 ataataaagactatatacatcattaatttaattgaatgaatctaaaatataaagttttgcttataacagtgaccgaagggtgta 10308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 46462447 - 46462481
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaa 143  Q
    |||||||||||||||||||||||||||| ||||||    
T  46462447 ataataaagactacatacatcatttattcaatgaa 46462481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 5418582 - 5418660
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| ||    | |||| |||||||||  ||| |||||||||||||| ||| |||||||||||    
T  5418582 ataataaagaccacatacatcattaat----tcaatgtatctaaaaagtaaatttttgcttatattagtgatcggagggtgta 5418660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 21884135 - 21884164
Alignment:
Q  162 ttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||||||    
T  21884135 ttttgcttatattaatgaccggagggtgta 21884164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 3511797 - 3511853
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgt 190  Q
    |||||||||||  || |||||  |||| ||||||||||| |||||||||||||||||    
T  3511797 atttaatgaataaatttaaaatgcaaagttttgcttataataatgaccggagggtgt 3511853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 21859568 - 21859624
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    |||||||||||||| |||||||||||||| ||||  |||||||| | |||| |||||    
T  21859568 ttatttaatgaatgaatctaaaaatcaaaattttatttatattagtaaccgaagggt 21859624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 21915431 - 21915487
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    |||||||||||||| |||||||||||||| ||||  |||||||| | |||| |||||    
T  21915431 ttatttaatgaatgaatctaaaaatcaaaattttatttatattagtaaccgaagggt 21915487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 47753 - 47831
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||||||||    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  47753 ataataaagactacatacatcattt----aatgaatgaatctaaaaatcaaagttttgcttatattaatgaccggagggtgta 47831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 11989376 - 11989454
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||||||||    |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  11989376 ataataaagactacatacatcattt----aatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggatggtgta 11989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 29302116 - 29302059
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  29302116 atttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 29302059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 29302153 - 29302210
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  29302153 atttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 29302210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 47740 - 47681
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||    
T  47740 ttatttaatgaatgaatctaaaaatcaaaattttacttatattagtgaccggagggtgta 47681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 11989361 - 11989304
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||    
T  11989361 atttaatgaatgaacctaaaaatcaaacttttgcttatatcagtgaccggagggtgta 11989304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 13043797 - 13043854
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||| |||| ||||||||||||||||||||||||||||| ||| |||||||||||    
T  13043797 atttaataaatgaatctaaaaatcaaacttttgcttatattagtgatcggagggtgta 13043854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 35156331 - 35156388
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||    
T  35156331 atttaatgaatgaatctaaaaataaaacttttgcttatattagtgaccggatggtgta 35156388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 39075915 - 39075844
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||    ||||||| |||||||| ||||||||||||||||| || ||||| |||||||||    
T  39075915 agactacatacatcattta----atgaatgaatctaaaattcaaacttttgcttatactagtgaccagagggtgta 39075844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 13043773 - 13043716
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||| |||| |||||||||||||||||||| |||||||| |||||||| ||||||    
T  13043773 atttaataaatgaatctaaaaatcaaacttttgtttatattagtgaccggaaggtgta 13043716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 35156317 - 35156260
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||| ||| ||||| |||||||| |||||||||||||||    
T  35156317 atttaatgaatgaatctaaaaataaaatttttgtttatattagtgaccggagggtgta 35156260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 39075982 - 39076053
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||    |||||||| |||||||| ||||||||||||||||| || ||||| |||| ||||    
T  39075982 agactacatacatcattt----aatgaatgaatctaaaattcaaacttttgcttatactagtgacccgaggatgta 39076053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 8258010 - 8258088
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| |||    ||||| |||||||||   || |||||||||||||| |||||||||||||||    
T  8258010 ataataaagaccacatacatcattaatt----gaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggtgta 8258088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 27936759 - 27936816
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||| |||| |||||||||||||  |||||||||||||| |||| ||||||||||    
T  27936759 atttaataaatgaatctaaaaatcaattttttgcttatattagtgactggagggtgta 27936816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 3384269 - 3384218
Alignment:
Q  140 tgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| |||||||||   || ||||||||||||||||||||||||||||||    
T  3384269 tgaatgtatctaaaaagtgaatttttgcttatattaatgaccggagggtgta 3384218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 14418151 - 14418202
Alignment:
Q  140 tgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| |||||||||   || ||||||||||||||||||||||||||||||    
T  14418151 tgaatgtatctaaaaagtgaatttttgcttatattaatgaccggagggtgta 14418202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 32914650 - 32914708
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaa 192  Q
    |||||||||||| |||||||||| ||| ||||| ||||||| |||| |||||| |||||    
T  32914650 atttaatgaatgaatctaaaaattaaatttttgtttatattgatgatcggaggatgtaa 32914708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 38834677 - 38834610
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggaggg 187  Q
    |||||| ||||||||||||||||||||    |||||||||  ||| ||||||||||| || |||||||||||    
T  38834677 agactatatacatcatttatttaatga----atctaaaaaataaatttttgcttataatagtgaccggaggg 38834610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 39075969 - 39075931
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttata 172  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  39075969 atttaatgaatgaatctaaaattcaaacttttgcttata 39075931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 6758619 - 6758541
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||| |||||||||| ||| ||||||||    |||||  |||| ||||||||||| || |||||||||| ||||    
T  6758619 ataataaagactatatacatcattaattgaatgaatg----taaaatgcaaagttttgcttataatagtgaccggaggatgta 6758541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 31008332 - 31008254
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| ||| |||| ||    |||||||  | | |||||||||||||| |||||||||||||||    
T  31008332 ataataaagaccacatacatcattaattaaatgtat----ctaaaaagtagatttttgcttatattagtgaccggagggtgta 31008254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 191
Target Start/End: Original strand, 31008375 - 31008404
Alignment:
Q  162 ttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||||||    
T  31008375 ttttgcttatattaatgaccggagggtgta 31008404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 33939389 - 33939442
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||| ||||||||   ||||||||||||||| || |||||||||||||||    
T  33939389 aatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 33939442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 533
Target Start/End: Original strand, 39807585 - 39807637
Alignment:
Q  481 actttattacataaactttcgtaaaaaattaccatttaaaatcgttaactagt 533  Q
    |||||||||||||||||||||||||||  | ||||| ||| || |||||||||    
T  39807585 actttattacataaactttcgtaaaaagctgccattgaaagtctttaactagt 39807637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 44349978 - 44349922
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaaga 194  Q
    |||||||| ||||||||   ||||||||| ||||| ||||||||| |||||||||||    
T  44349978 aatgaatgaatctaaaatataaacttttgtttataataatgaccgaagggtgtaaga 44349922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 25772241 - 25772300
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  25772241 ttatttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 25772300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 7725012 - 7724955
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  7725012 atttaatgaatgaacctaaaaatcaaacttttgcttatattaatgaccggagggtgta 7724955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 7725042 - 7725099
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  7725042 atttaatgaatgaacctaaaaatcaaacttttgcttatattaatgaccggagggtgta 7725099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 20019836 - 20019893
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  20019836 atttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 20019893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 25772228 - 25772149
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||| |   | |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  25772228 ataataaagactacatacgt---tcatttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 25772149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 1996899 - 1996842
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  1996899 atttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 1996842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 1996936 - 1996993
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||    
T  1996936 atttaatgaatgaatctaaaaatcaaatttttgcttatattagtgaccggagggtgta 1996993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 291886 - 291943
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||||||||| |||||||| | |||||||||||||    
T  291886 atttaatgaatgaatctaaaaatcaaacttttgtttatattagtaaccggagggtgta 291943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 27314527 - 27314470
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||    
T  27314527 atttaatgaatgaatctaaaaaccaaatttttgcttatattagtgaccggagggtgta 27314470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 27314542 - 27314620
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||| ||||||    |||||||| ||||||||  ||||||||||||||||||  |||||||||||||||    
T  27314542 ataataaagactacatacgtcattt----aatgaatgaatctaaaatccaaacttttgcttatatttgtgaccggagggtgta 27314620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 29232892 - 29232949
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||    
T  29232892 atttaatgaataaatctaaaaatcaaatctttgcttatattaatgaccggagggtgta 29232949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 16899775 - 16899829
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||| |||||    
T  16899775 atttaatgaatgaacctaaaaatcaaacttttgcttatattagtgaccgaagggt 16899829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 291842 - 291785
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| || ||||||||||||||||| ||||||||||||| ||||| ||||    
T  291842 atttaatgaatgaatgtaaaaatcaaacttttgtttatattaatgacaggaggatgta 291785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 1100124 - 1100202
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||||||||    |||||||  ||||||||  |||| ||||||||||| |||| |||||||||||||    
T  1100124 ataataaagactacatacatcattt----aatgaattaatctaaaatgcaaagttttgcttataataattaccggagggtgta 1100202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 26300184 - 26300106
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| |||    ||||| |||||||||  ||| |||||||||||||| |||||||||||||||    
T  26300184 ataataaagaccacatacatcattaatt----gaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 26300106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 39035473 - 39035534
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaag 193  Q
    |||||||||||||| || ||||||||||| |||||||||||||| |||| | ||||||||||    
T  39035473 ttatttaatgaatgaatttaaaaatcaaatttttgcttatattagtgactgaagggtgtaag 39035534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 13311247 - 13311170
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| |||    ||||| |||||||| | | |||||||||||||||| |||||||||||||||    
T  13311247 ataataaagaccacatacatcattaatt----gaatgtatctaaaagt-agacttttgcttatattagtgaccggagggtgta 13311170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 25037206 - 25037126
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| | |||||||||||  | |||||||| ||||||||  |||| ||||||||||| |||| || ||||||||||    
T  25037206 ataataaagaccatatacatcattt--taaatgaatgaatctaaaatgcaaagttttgcttataataataacaggagggtgta 25037126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 25408612 - 25408688
Alignment:
Q  111 aataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||| |||||||||||||||| |||||||    ||||||   ||| ||||||||||||| ||||||||| ||||||    
T  25408612 aataaagaccacatacatcatttattgaatgaat----ctaaaacataaatttttgcttatatttatgaccggatggtgta 25408688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 1098701 - 1098768
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggaggg 187  Q
    ||||||||||||| ||||||| |||||||    |||||||  ||||||||||||||| || |||||||||||    
T  1098701 agactacatacattatttattaaatgaat----ctaaaaaataaacttttgcttataatagtgaccggaggg 1098768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 26141803 - 26141749
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaa 192  Q
    |||||||| ||||||||   ||||||||||||||| || ||||||||||||||||    
T  26141803 aatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgtaa 26141749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 42013895 - 42013820
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    ||||||||||| |||||||||||| |||    ||||| |||||||||   || |||||||||||||| ||||||||||||    
T  42013895 ataataaagaccacatacatcattaatt----gaatgtatctaaaaagtgaatttttgcttatattagtgaccggagggt 42013820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 6763721 - 6763692
Alignment:
Q  162 ttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||||||    
T  6763721 ttttgcttatattaatgaccggagggtgta 6763692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 7330070 - 7330119
Alignment:
Q  139 atgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    ||||||| ||||||||  |||| ||||||||||| |||||||||||||||    
T  7330070 atgaatgaatctaaaatgcaaagttttgcttataataatgaccggagggt 7330119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 175
Target Start/End: Complemental strand, 16899760 - 16899698
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatatta 175  Q
    |||||| ||||||||||| ||    ||||||| |||| |||||||||||||||||||| ||||||||    
T  16899760 ataatatagactacatacgtc----atttaataaatgaatctaaaaatcaaacttttgtttatatta 16899698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 41180237 - 41180208
Alignment:
Q  162 ttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||||||    
T  41180237 ttttgcttatattaatgaccggagggtgta 41180208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 180
Target Start/End: Complemental strand, 39035451 - 39035403
Alignment:
Q  132 ttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgac 180  Q
    |||| |||||| || |||||||||||||| ||||| |||||||||||||    
T  39035451 ttatgtaatgagtgaatctaaaaatcaaatttttgattatattaatgac 39035403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 40470506 - 40470563
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  40470506 atttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggtgta 40470563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 22456268 - 22456325
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||||    
T  22456268 atttaatgaatgaatctaaaaatcaaatttttgctgatattagtgaccggagggtgta 22456325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 40470491 - 40470413
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||| |||||||    ||||||| |||||||||| ||| |||||||||||||| |||||| ||||||||    
T  40470491 ataataaagactacatacgtcattta----atgaatgaatctaaaaattaaatttttgcttatattagtgaccgaagggtgta 40470413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 135 - 191
Target Start/End: Original strand, 26143537 - 26143593
Alignment:
Q  135 tttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||    
T  26143537 tttaatgaatgaatttaaaaatcaaacttttgtttatattagtgaccggagggtgta 26143593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 22853945 - 22853895
Alignment:
Q  481 actttattacataaactttcgtaaaaaattaccatttaaaatcgttaacta 531  Q
    |||||||||||||||||||| |||||||||| ||||||||||| |||||||    
T  22853945 actttattacataaactttcataaaaaattaacatttaaaatctttaacta 22853895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 43818914 - 43818857
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||  |||| ||||||||||| || |||||||||||||||    
T  43818914 atttaatgaatgaatctaaaatgcaaaattttgcttatagtagtgaccggagggtgta 43818857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 4980340 - 4980375
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaat 144  Q
    |||||||||||||||||||||||||||| |||||||    
T  4980340 ataataaagactacatacatcatttattgaatgaat 4980375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 30578286 - 30578365
Alignment:
Q  106 tcaataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtg 189  Q
    |||||||||||||||  |||||||||||    |||||||| ||||||||  |||| ||||||||||| || |||| ||||||||    
T  30578286 tcaataataaagactgtatacatcattt----aatgaatgaatctaaaatacaaagttttgcttataatagtgacaggagggtg 30578365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 17109316 - 17109263
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggaggg 187  Q
    |||||||||||  |||||||||| ||| ||||||||||||  ||||||||||||    
T  17109316 atttaatgaattaatctaaaaattaaatttttgcttatatccatgaccggaggg 17109263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 38455189 - 38455160
Alignment:
Q  162 ttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||||||    
T  38455189 ttttgcttatattaatgaccggagggtgta 38455160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 38677613 - 38677560
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||| ||||||||   ||||||||||||||| || |||||||||||||||    
T  38677613 aatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 38677560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 52168327 - 52168278
Alignment:
Q  142 aatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||| |||||||||  ||| |||||||||||||| |||||||||||||||    
T  52168327 aatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 52168278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 17109332 - 17109384
Alignment:
Q  140 tgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaa 192  Q
    |||||| |||||||||||||||||||| |||||||| ||| || | |||||||    
T  17109332 tgaatgaatctaaaaatcaaacttttgtttatattagtgatcgaatggtgtaa 17109384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 9878982 - 9879058
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtg 189  Q
    ||||||||||||||||||     |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  9878982 ataataaagactacatac----gttatttaatgaatgaatctaaaaatcaaacgtttgcttatattagtgaccggagggtg 9879058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 13029402 - 13029456
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  13029402 atttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagggt 13029456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 42749121 - 42749050
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  42749121 agactacatacatcattta----atgaatgaatctaaaaatcaaacttttgcttatattagtgaccggaggatgta 42749050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 17087407 - 17087350
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||    
T  17087407 atttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggaggatgta 17087350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 17087435 - 17087487
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagg 186  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  17087435 atttaatgaatgaatctaaaaatcaaacttttgcttatattagtgaccggagg 17087487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 92926 - 92983
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||    
T  92926 atttaatgaataaatctaaaaatcaaacttttgcttatattagtgaccggagagtgta 92983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 9878967 - 9878910
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||    
T  9878967 atttaatgaatgaatctaaaaatcaaacatttgcttatattagtgaccgcagggtgta 9878910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 92895 - 92838
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| ||||  ||||||||||||||||||||||||||||| |||| ||||||||||    
T  92895 atttaacgaattaatctaaaaatcaaacttttgcttatattagtgacaggagggtgta 92838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 13029379 - 13029338
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatatta 175  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  13029379 atttaatgaatgaatctaaaaatcaaacttttgcttatatta 13029338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 24287837 - 24287780
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||  |||| ||||||||||| || |||||||||||||||    
T  24287837 atttaatgaatgaatctaaaatgcaaagttttgcttataatagtgaccggagggtgta 24287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 40640330 - 40640273
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||  |||| ||||||||||| || |||||||||||||||    
T  40640330 atttaatgaatgaatctaaaatacaaagttttgcttataatagtgaccggagggtgta 40640273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 461
Target Start/End: Original strand, 9004995 - 9005039
Alignment:
Q  417 cactctttaaatattctacatctagtaattattttttaaaaatgt 461  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||    
T  9004995 cactctttaaatattctaaattaagtaattattttttaaaaatgt 9005039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 9232586 - 9232538
Alignment:
Q  134 atttaatgaatggat-ctaaaaatcaaacttttgcttatattaatgacc 181  Q
    |||||||||||| || ||||||||||||||||||||||||||| |||||    
T  9232586 atttaatgaatgaattctaaaaatcaaacttttgcttatattagtgacc 9232538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 1739659 - 1739710
Alignment:
Q  140 tgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| |||||||||  ||| |||||||||||||| |||||||||||||||    
T  1739659 tgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 1739710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 33070231 - 33070160
Alignment:
Q  116 agactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||    ||||||| ||||||||  |||| |||||||||||  | |||||||||||||||    
T  33070231 agactacatacatcattta----atgaatgaatctaaaatacaaagttttgcttataacagtgaccggagggtgta 33070160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 9056088 - 9056166
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| ||| |||| ||    |||||||   || |||||||||||||| |||||||||||||||    
T  9056088 ataataaagaccacatacatcattaattaaatgtat----ctaaaaagtgaatttttgcttatattagtgaccggagggtgta 9056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 33070257 - 33070310
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||| ||||||||  |||| ||||||||||| || |||||||||||||||    
T  33070257 aatgaatgaatctaaaatgcaaaattttgcttataatagtgaccggagggtgta 33070310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 529
Target Start/End: Complemental strand, 32133740 - 32133692
Alignment:
Q  481 actttattacataaactttcgtaaaaaattaccatttaaaatcgttaac 529  Q
    ||||||||||| |||||||| ||||||||||| ||||||| || |||||    
T  32133740 actttattacacaaactttcataaaaaattactatttaaattccttaac 32133692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 20057168 - 20057251
Alignment:
Q  104 aatcaataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||| |||||||||||||||||| |||||||    ||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  20057168 aatctataataaagactacatacgtcattta----atggatgaatctaaaagtcaaatttttgcttatattaatgaccggagggtgta 20057251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 4817092 - 4817136
Alignment:
Q  147 atctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||||||||||||||||||| ||||||||||    
T  4817092 atctaaaaatcaaacttttgcttatattaatgactggagggtgta 4817136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 31102037 - 31102094
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| ||||||||  |||||||||||||||| |||||| |||||||||||    
T  31102037 atttaatgaatgaatctaaaatgcaaacttttgcttataataatgatcggagggtgta 31102094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 43426722 - 43426773
Alignment:
Q  140 tgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| |||||||||  ||| ||||||||||||||||||||||||||||||    
T  43426722 tgaatgtatctaaaaaataaatttttgcttatattaatgaccggagggtgta 43426773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 5574177 - 5574255
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||||| |||    ||||| |||||||||  | | |||||||||||||| |||||||||||||||    
T  5574177 ataataaagaccacatacatcattaatt----gaatgtatctaaaaagtagatttttgcttatattagtgaccggagggtgta 5574255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 23992427 - 23992370
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||| || ||||||||||||||||| |||||||| ||| |||| ||||||    
T  23992427 atttaatgaatgaatttaaaaatcaaacttttgtttatattagtgatcggaaggtgta 23992370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 529
Target Start/End: Complemental strand, 431744 - 431630
Alignment:
Q  418 actctttaaatattctacatctagtaattattttttaaaaatgttaa---tttttacttcaaacttactttattacataaactttcgtaaaaaattacca 514  Q
    ||||||||||||||||| ||  |||||||||| ||||||||||||||   |||  | ||| ||   ||||| ||||| |||||||| |||||| ||||||    
T  431744 actctttaaatattctatattaagtaattattctttaaaaatgttaaaattttcaatttccaatgcacttttttacacaaactttcataaaaagttacca 431645  T
Q  515 tttaaaatcgttaac 529  Q
    |||||| || |||||    
T  431644 tttaaagtctttaac 431630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 23992464 - 23992518
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggt 188  Q
    |||||||||| | |||||||||||||| |||| ||||||||| ||| ||||||||    
T  23992464 atttaatgaacgaatctaaaaatcaaatttttacttatattagtgatcggagggt 23992518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 20057158 - 20057101
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||  || ||||||||||||||||||| |||||| |||  ||||||||||    
T  20057158 atttaatgaatcaatttaaaaatcaaacttttgctcatattagtgatgggagggtgta 20057101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 26234116 - 26234169
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||| ||||||||   ||||||||||||||| || |||||||||||||||    
T  26234116 aatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 26234169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 41805347 - 41805269
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||| |||||||||| ||| |||||||     |||||  |||| ||||||||||| || |||||||||||||||    
T  41805347 ataataaagactatatacatcattaattgaatgaatt----taaaatgcaaaattttgcttataatagtgaccggagggtgta 41805269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 41805362 - 41805419
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||| || ||||||||  |||| ||||||||||| |||||||| |||||||||    
T  41805362 atttaatgagtgaatctaaaatgcaaagttttgcttataataatgaccagagggtgta 41805419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 534
Target Start/End: Complemental strand, 3666478 - 3666430
Alignment:
Q  486 attacataaactttcgtaaaaaattaccatttaaaatcgttaactagta 534  Q
    ||||||||||||||| ||||||||||  |||||| ||| ||||||||||    
T  3666478 attacataaactttcataaaaaattattatttaagatctttaactagta 3666430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 11385447 - 11385487
Alignment:
Q  417 cactctttaaatattctacatctagtaattattttttaaaa 457  Q
    |||||||||||||||||| ||| |||||||||| |||||||    
T  11385447 cactctttaaatattctaaatcaagtaattattctttaaaa 11385487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 37195079 - 37195047
Alignment:
Q  159 aacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||| |||||||||||||||    
T  37195079 aacttttgcttatattagtgaccggagggtgta 37195047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 37284997 - 37284945
Alignment:
Q  417 cactctttaaatattctacatctagtaattattttttaaaaatgttaattttt 469  Q
    ||||||||||||||| || ||  |||||||||||||||||||| |||| ||||    
T  37284997 cactctttaaatattttaaattaagtaattattttttaaaaatcttaaatttt 37284945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 37980789 - 37980749
Alignment:
Q  151 aaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| ||||||||| ||||||||||||||||||| ||||    
T  37980789 aaaaattaaacttttgattatattaatgaccggaggatgta 37980749  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 21506530 - 21506611
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaaga 194  Q
    ||||||||||  |||||||||||| |||    ||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  21506530 ataataaagatcacatacatcattaatt----gaatgtatctaaaaattaaatttttgcttatattaatgaccggatggtgtaaga 21506611  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 13462995 - 13462928
Alignment:
Q  120 tacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||||||||||||    ||||||||||||||| ||||||||||||| || || |||||||||||||||    
T  13462995 tacatacatcatttatt----gaatggatctaaaaagcaaacttttgcttctaatagtgaccggagggtgta 13462928  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 14310613 - 14310667
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgtaa 192  Q
    |||||||| ||||||||  || | |||||||||||||| ||||||||||||||||    
T  14310613 aatgaatgaatctaaaatacagatttttgcttatattagtgaccggagggtgtaa 14310667  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 191
Target Start/End: Complemental strand, 2988823 - 2988794
Alignment:
Q  162 ttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||||||||||||||||||||||    
T  2988823 ttttgcttatattaatgaccggagggtgta 2988794  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 31398318 - 31398371
Alignment:
Q  138 aatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||||| ||||||||   ||||||||||||||| || |||||||||||||||    
T  31398318 aatgaatgaatctaaaatgtaaacttttgcttataatagtgaccggagggtgta 31398371  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 32254888 - 32254966
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||||||||| |||||||||    |||||||||||| ||||||||    |||||||||||||| || ||| |||||||||||    
T  32254888 ataataaagaccacatacatc----atttaatgaatgaatctaaaatattaacttttgcttataatagtgatcggagggtgta 32254966  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 4808331 - 4808299
Alignment:
Q  111 aataaagactacatacatcatttatttaatgaa 143  Q
    ||||||||| |||||||||||||||||||||||    
T  4808331 aataaagaccacatacatcatttatttaatgaa 4808299  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 190
Target Start/End: Original strand, 30460680 - 30460757
Alignment:
Q  109 ataataaagactacatacatcatttatttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgt 190  Q
    ||||||||||| |||||||||||| |||    ||||  |||||||||  ||| |||||||||||||| |||| |||||||||    
T  30460680 ataataaagaccacatacatcattaatt----gaatctatctaaaaagtaaatttttgcttatattagtgactggagggtgt 30460757  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 120239 - 120290
Alignment:
Q  140 tgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    |||||| |||||||||  ||| |||||||||||||| |||||||||||||||    
T  120239 tgaatgtatctaaaaagtaaatttttgcttatattagtgaccggagggtgta 120290  T

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Target: scaffold0536 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 4038 - 4095
Alignment:
Q  134 atttaatgaatggatctaaaaatcaaacttttgcttatattaatgaccggagggtgta 191  Q
    ||||| |||||| |||||||||  ||| |||||||||||||| ||||| |||||||||    
T  4038 atttattgaatgtatctaaaaagtaaatttttgcttatattagtgaccagagggtgta 4095  T

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