View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2387_low_6 (Length: 476)
Name: NF2387_low_6
Description: NF2387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2387_low_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 35929175 - 35929616
Alignment:
| Q |
19 |
ataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929175 |
ataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttct |
35929274 |
T |
|
| Q |
119 |
ccatcttattctcaacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttgga |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929275 |
tcatcttattctcaacttggtttccatatatcttagtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttgga |
35929374 |
T |
|
| Q |
219 |
ggcatgtgaaagaaacaagagaacgatgacactagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35929375 |
ggcatgtgaaagaaacaagagaacgatgacattagtattgaccaggcaatgatcagccggctgatttaatatagtttctccttgaatgtaatggattgtc |
35929474 |
T |
|
| Q |
319 |
cttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctctatct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35929475 |
cttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgtcctctaact |
35929574 |
T |
|
| Q |
419 |
tattgttgccgtttatgcagttgtactgtatcttcatcacag |
460 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
35929575 |
tattgttgccgtttatgcacttgtactgtatcttcatcacag |
35929616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 24 - 455
Target Start/End: Original strand, 35935823 - 35936261
Alignment:
| Q |
24 |
ctcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttctccatc |
123 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||||| | ||||| | |||||| |||||||||||||||||||| |||| |||| |
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|
| T |
35935823 |
ctcatcaagtttatcagcttgactagctttgctataaggaaaaataaccaagagactcaagttgagtaataaacaagcataaagagaaattttcttcatc |
35935922 |
T |
|
| Q |
124 |
ttattctcaacttggtttccatatat-cttagtttct-atct----atttatagatacaaaacagtgaaagtattttagggcttgttttgttgtggttgg |
217 |
Q |
| |
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|| |||| || ||||||| ||||| || ||||||| |||| ||||||||||| ||||||||| | | || | | ||||||||||||| ||||| |
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| T |
35935923 |
ttgttcttaagttggttttg-tatatactaagtttcttatcttactatttatagataaaaaacagtggcaattttgcatgacttgttttgttgttgttgg |
35936021 |
T |
|
| Q |
218 |
aggcatgtgaaagaaacaagagaacgatgacactagtattgac-------caggcaatgatcagccggctgattt-aatatagtttctccttgaatgtaa |
309 |
Q |
| |
|
|| ||||||||||||||||||| ||| ||| || ||||||| || |||| ||||||||||||| ||| ||| |||||||| |||||||| || |
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| T |
35936022 |
ag-catgtgaaagaaacaagagtgtgataacattactattgactactgaccatgcaa-gatcagccggctggttttaatttagtttcttcttgaatgcaa |
35936119 |
T |
|
| Q |
310 |
tggattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgataaatatattttgt |
409 |
Q |
| |
|
||||||||| |||||||||| ||| |||| |||| |||||||||||||||||||||||||||| ||||||||| ||| |||||| ||||| ||| | |
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|
| T |
35936120 |
tggattgtctttgtttccctgtttgtagaatcataacaagttatttaacaatttagcactttgtcattaactttgaaagttaatg----atatacttttt |
35936215 |
T |
|
| Q |
410 |
cctctatcttattgttgccgtttatgcagttgtactgtatcttcat |
455 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
35936216 |
cctctaacttattgttgtggttgatgcagttgtactgtatcttcat |
35936261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 394
Target Start/End: Original strand, 35916234 - 35916641
Alignment:
| Q |
19 |
ataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaact---cacgctgagtagtaaacaagcataaagagaaacct |
115 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||||||||||||||||| |
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|
| T |
35916234 |
ataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaaaagactgatcaaattgagtaataaacaagcataaagagaaacct |
35916333 |
T |
|
| Q |
116 |
tctccatcttattctcaacttggtttccatatatctta-gtttctatctatttatagatacaaaacagtgaaagtattttagggcttgttttgttgtg-- |
212 |
Q |
| |
|
||| |||||| |||||||||||||||| ||||||| || ||||||| |||||||||||| |||||| ||| | | || ||| ||| ||| ||||| |
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|
| T |
35916334 |
tcttcatcttgttctcaacttggtttcaatatatcataagtttctaactatttatagatgaaaaacattgacaattttgaaggacttatttggttgttct |
35916433 |
T |
|
| Q |
213 |
-gttggaggcatgtgaaagaaacaagagaacgatgaca-ctagtattga---------------ccaggcaatgatcagccggctga-tttaatatagtt |
294 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||| ||| ||||| ||| ||| ||||||||||||| |||||| ||||| |
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|
| T |
35916434 |
tgttggagccatgtgaaagaaacaagagagagataacatctaccattgaggcattgaccaatgtccatgcattgatcagccggctatgtttaatttagtt |
35916533 |
T |
|
| Q |
295 |
tct---ccttgaatgtaatg-----gattgtccttgtttccctttttctagacacatatcaagttatttaacaatttagcactttgtgattaacttttaa |
386 |
Q |
| |
|
||| |||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| || |
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|
| T |
35916534 |
tcttctccttgaatgtaatgtaagggattgtcattgtttccctttttctagaatcatatcaagttatttaacgttttagcactttgtgattaactttgaa |
35916633 |
T |
|
| Q |
387 |
acttaatg |
394 |
Q |
| |
|
| |||||| |
|
|
| T |
35916634 |
agttaatg |
35916641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 35911847 - 35912013
Alignment:
| Q |
19 |
ataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttct |
118 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |||||||||||||||||| | ||||| | ||||||||||||||||||||||||||||||||| |
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|
| T |
35911847 |
ataaactcaacaagtttatcagcttgactagctttgcaatatggaaaaataaccaatagactcaagttgagtagtaaacaagcataaagagaaaccttct |
35911946 |
T |
|
| Q |
119 |
ccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagatacaaaacagtg |
184 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||| | |||||||| |||||||||||| ||||||||| |
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|
| T |
35911947 |
tcatcttgttctcaacttggcttcaatatatcataagtttctaactatttatagatgaaaaacagtg |
35912013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 35941368 - 35941497
Alignment:
| Q |
19 |
ataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttct |
118 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||||||||||||||||||| |
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|
| T |
35941368 |
ataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaataaactcaagttgagtattaaacaagcataaagagaaaccttct |
35941467 |
T |
|
| Q |
119 |
ccatcttattctcaacttggtttccatata |
148 |
Q |
| |
|
||||||| ||||||||||| |||| ||||| |
|
|
| T |
35941468 |
ccatcttgttctcaacttgatttctatata |
35941497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 35922503 - 35922658
Alignment:
| Q |
19 |
ataaactcatcaagtttatcagtttgactagctttgctatatggaaaaataaccaaaaaactcacgctgagtagtaaacaagcataaagagaaaccttct |
118 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||||||| |
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|
| T |
35922503 |
ataaactcattgagtttatcagcttgactagctttgctatatggaaaaataaccaaaaggctcaagttgagtaataaacaagcataaagagaaaccttct |
35922602 |
T |
|
| Q |
119 |
ccatcttattctcaacttggtttccatatatc-ttagtttctatctatttatagat |
173 |
Q |
| |
|
|||||| |||||||||||||||| | ||||| | |||||||| | |||||||||| |
|
|
| T |
35922603 |
tcatcttgttctcaacttggtttcaacatatcataagtttctaacaatttatagat |
35922658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 301 - 439
Target Start/End: Original strand, 35922772 - 35922909
Alignment:
| Q |
301 |
tgaatgtaatggattgtccttgtttccctttttctagacacat---atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatgata |
397 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| ||| |||||| ||||||| ||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
35922772 |
tgaatgtaagtgattttccttgtttccctttttctagaatcatggtatcaaggtatttaataatttagaactttgtgattaactttgaaagttaatg--- |
35922868 |
T |
|
| Q |
398 |
aatatattttgtcctctatcttattgttgccgtttatgcagt |
439 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
35922869 |
-atatatttgttcctctaacttattgttgtggtttatgcagt |
35922909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 306 - 394
Target Start/End: Original strand, 35912129 - 35912219
Alignment:
| Q |
306 |
gtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttttaaacttaatg |
394 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||| ||| |||||||||||||||| ||||| ||| ||||||||||||| ||| |||||| |
|
|
| T |
35912129 |
gtaatggattgttcttgtttccgtttttctagaatcatgtatcaagttatttaacattttagtactatgtgattaactttgaaagttaatg |
35912219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 383
Target Start/End: Original strand, 35941632 - 35941721
Alignment:
| Q |
294 |
ttctccttgaatgtaatggattgtccttgtttccctttttctagacacat--atcaagttatttaacaatttagcactttgtgattaacttt |
383 |
Q |
| |
|
||||||||||||||||| | || ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35941632 |
ttctccttgaatgtaattgtttt--cttgttttcctttttctagaatcatgtatcaagttatttaacaatttagcactttgtaattaacttt |
35941721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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