View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_high_1 (Length: 484)
Name: NF2388_high_1
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 61 - 468
Target Start/End: Complemental strand, 5402380 - 5401978
Alignment:
| Q |
61 |
tatttgcatagatgtgttgtcatgtcaatactgaatagaatcgtccacataaagtgcgtatttgcttttgtcatccggtgaaaaccattcaaagcatgca |
160 |
Q |
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| T |
5402380 |
tatttgcatagatgtgttgtca-----atactgaatagtatcgtccacataaagtgcgtatttgcttttgtcatatggtgaaaaccattcaaagcatgca |
5402286 |
T |
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| Q |
161 |
tgcatgtatgctattcttctttcatataaatacacatgggaatcattctctcaagcaacagatacatctaagtattagcatcacaaatcttaatatatag |
260 |
Q |
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| T |
5402285 |
tgcatgtatgctattcttctttcatataaatacacatgggaatcattctctcaagcaacagatacatccaagtattagcatcacaaatctta----atag |
5402190 |
T |
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| Q |
261 |
cattacaccaagc----atagtatatagtgaaaataaaatgaactggtggttggctagagcaactggtgatcatcctggcaaggcaagttcttacgaaca |
356 |
Q |
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| T |
5402189 |
cattacaccaagcatatatagtatatagtgaaaataaaatgaactggtggttggctagagcaactggtgatcatcctggcaaggcaagttcttacgaact |
5402090 |
T |
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| Q |
357 |
aaatttgttctatatttttcattttaatgctaattaatttgatatatctattatgaatgacaataagcactgggcaatgaggnnnnnnnnttgatgtatc |
456 |
Q |
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| T |
5402089 |
aaatttgttctatatttttcattttaatgctaattaatttgatatatctattatgaatgacaataaacactgggcaacgaggaaaaaaaattgatgtatc |
5401990 |
T |
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| Q |
457 |
aactggcaaaga |
468 |
Q |
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| T |
5401989 |
aactggcaaaga |
5401978 |
T |
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