View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_high_10 (Length: 250)
Name: NF2388_high_10
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 42638335 - 42638099
Alignment:
| Q |
2 |
cttgaagtcaagatggagaaatcagtgatcgctgctgatggaaaggtaaacaatcatatacatgatgatattgccatcattattctgtcacagttgcctc |
101 |
Q |
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| T |
42638335 |
cttgaagtaaagatggagaaatcagtgatcgcagctgatggaaaggtgaacaatcatatacatgacgatattgccatcattattctgtcaaagttgcctc |
42638236 |
T |
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| Q |
102 |
ttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgtttcgaagaaatttcttatataa |
201 |
Q |
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| T |
42638235 |
ttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagataatccttatttcaagaccatgtttcgaagaaatttcttatataa |
42638136 |
T |
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| Q |
202 |
gaatcattcttattacactgatacatctctcttccta |
238 |
Q |
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| T |
42638135 |
gaatcattcttattacaatgatacatctctcttccta |
42638099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 98 - 206
Target Start/End: Complemental strand, 42630558 - 42630450
Alignment:
| Q |
98 |
cctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgtttcgaagaaatttcttat |
197 |
Q |
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| T |
42630558 |
cctcttaaatctttgtttcgatttggttgtgtgcgtaaatcatggtctcttttgtttaaaaattcttatttcatgaacatgtttcgaaagaatttcttat |
42630459 |
T |
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| Q |
198 |
ataagaatc |
206 |
Q |
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| T |
42630458 |
ccaagaatc |
42630450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 9576334 - 9576242
Alignment:
| Q |
147 |
tcttgttagagaatccttatttcaagaccatgtttcgaagaaatttcttatataagaatcattcttattacactgatacatctctcttcctat |
239 |
Q |
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| T |
9576334 |
tcttgtttgaaaacccttatttcatgagcatgtttaggaggaatttcttatacaaggatcattcttattacaatgatacatctttcctcctat |
9576242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 232
Target Start/End: Complemental strand, 3368809 - 3368620
Alignment:
| Q |
43 |
aaaggtaaacaatcatatacatgatgatattgccatcattattctgtcacagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttgg |
142 |
Q |
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| T |
3368809 |
aaaggttagcaatcacatatatgatgacgttgccttcgtcattctgtctaaattacctctcaaatctttgtttcgatttcgttgtgtgcgtaaatcatgg |
3368710 |
T |
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| Q |
143 |
tctttcttgttagagaatccttatttcaagaccatgtttcgaagaaatttcttatataagaatcattcttattacactgatacatctctc |
232 |
Q |
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| T |
3368709 |
tctctcttatttgaaaacccttatttcatggacatgttccgaagaatttttttatctaagaatcattcttattacaatgatacatctctc |
3368620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 5441524 - 5441660
Alignment:
| Q |
82 |
tattctgtcacagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgttt |
181 |
Q |
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| T |
5441524 |
tattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatcgtggtctatcttatttaaaaatcgttatttcatgagcatgttc |
5441623 |
T |
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| Q |
182 |
cgaagaaatttcttatataagaatcattcttattaca |
218 |
Q |
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| T |
5441624 |
cgcaaaaatttattatgtaagaatcattcttattaca |
5441660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 5450534 - 5450670
Alignment:
| Q |
82 |
tattctgtcacagttgcctcttaaatccttgactcgatttggttgtgtgcgtaaatcttggtctttcttgttagagaatccttatttcaagaccatgttt |
181 |
Q |
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| T |
5450534 |
tattttgtcaaaattgcctgtgaaatcattgaatcgttttggatgcgtacgcaaatcgtggtctatcttatttaaaaatcgttatttcatgagcatgttc |
5450633 |
T |
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| Q |
182 |
cgaagaaatttcttatataagaatcattcttattaca |
218 |
Q |
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|| | |||||| |||| |||||||||||||||||||| |
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| T |
5450634 |
cgcaaaaatttattatgtaagaatcattcttattaca |
5450670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 34287656 - 34287727
Alignment:
| Q |
161 |
ccttatttcaagaccatgtttcgaagaaatttcttatataagaatcattcttattacactgatacatctctc |
232 |
Q |
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| T |
34287656 |
ccttatttcatgaacatctttcgaagaaatttcttatccaatgatcattcatattacaacgatacatctctc |
34287727 |
T |
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