View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2388_high_4 (Length: 339)

Name: NF2388_high_4
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2388_high_4
NF2388_high_4
[»] chr6 (6 HSPs)
chr6 (78-276)||(16529949-16530167)
chr6 (273-326)||(16530102-16530155)
chr6 (113-163)||(4128852-4128902)
chr6 (48-97)||(4100462-4100508)
chr6 (48-97)||(4125793-4125839)
chr6 (18-90)||(4129084-4129154)
[»] chr4 (1 HSPs)
chr4 (74-135)||(56338866-56338929)
[»] chr3 (3 HSPs)
chr3 (96-161)||(32510104-32510169)
chr3 (20-97)||(34376241-34376315)
chr3 (108-153)||(34376360-34376405)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 78 - 276
Target Start/End: Original strand, 16529949 - 16530167
Alignment:
Q  78 aacaagagagcttattacatgtgtatataatgatataggtttaaccaatacatgattatttaagaccaacataaaatgaaaagtcatcatcatgttcgag 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16529949 aacaagagagcttattacatgtgtatataatgatataggtttaaccaatacatgattatttaagaccaacataaaatgaaaagtcatcatcatgttcgag 16530048  T
Q  178 gattctcctctaaaagtagatattgttcc--------------------tcaaattgagcttacacaaacttatcacgtctattagatcactaattgtgt 257  Q
    |||||||||||||||||||||||||||||                    ||| ||||||||||||||||| |||||||||||||||||||| |||| |||    
T  16530049 gattctcctctaaaagtagatattgttcccttcttttgtcttaagtaattcacattgagcttacacaaacatatcacgtctattagatcaccaattctgt 16530148  T
Q  258 tcctttctctctcaaattg 276  Q
    |||||||||||||||||||    
T  16530149 tcctttctctctcaaattg 16530167  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 16530102 - 16530155
Alignment:
Q  273 attgagcttacacaaacatatcacgtctattagatcaccaattctgttcatttc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16530102 attgagcttacacaaacatatcacgtctattagatcaccaattctgttcctttc 16530155  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 4128902 - 4128852
Alignment:
Q  113 taggtttaaccaatacatgattatttaagaccaacataaaatgaaaagtca 163  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  4128902 taggtttaactaatacatgattatttaagaccaacataaaaggaaaagtca 4128852  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 4100508 - 4100462
Alignment:
Q  48 tttttaaaaccaatcatattatttaaccataacaagagagcttattacat 97  Q
    ||||||||||||||||||||   |||||||||||||||||||| ||||||    
T  4100508 tttttaaaaccaatcatatt---taaccataacaagagagctttttacat 4100462  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 4125839 - 4125793
Alignment:
Q  48 tttttaaaaccaatcatattatttaaccataacaagagagcttattacat 97  Q
    ||||||||||||||||||||   |||||||||||||||||||| ||||||    
T  4125839 tttttaaaaccaatcatatt---taaccataacaagagagctttttacat 4125793  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 4129154 - 4129084
Alignment:
Q  18 ctatcaaacaacctttt-ctccacctattcatttttaaaaccaatcatattatttaaccataacaagagagctt 90  Q
    ||||||||||||||||| |||| | |  |||||||||||||||||||   |||||||| |||||||||||||||    
T  4129154 ctatcaaacaacctttttctcctcatgctcatttttaaaaccaatca---tatttaactataacaagagagctt 4129084  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 56338866 - 56338929
Alignment:
Q  74 ccataacaagagagcttattaca--tgtgtatataatgatataggtttaaccaatacatgatta 135  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| | ||||||||||    
T  56338866 ccataacaagagagcttattacacatgtgtatataatgatataggtttaactagtacatgatta 56338929  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 32510169 - 32510104
Alignment:
Q  96 atgtgtatataatgatataggtttaaccaatacatgattatttaagaccaacataaaatgaaaagt 161  Q
    ||||||||||||||||| ||||||||| |  |||||||||||||||| |||||||||| |||||||    
T  32510169 atgtgtatataatgataaaggtttaactagcacatgattatttaagatcaacataaaaggaaaagt 32510104  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 34376241 - 34376315
Alignment:
Q  20 atcaaacaaccttttctccacctattcatttttaaaaccaatcatattatttaaccataacaagagagcttattacat 97  Q
    ||||||| | ||| ||||||| |  ||||||||||||||||| |||||   |||||||||||||||||||||||||||    
T  34376241 atcaaactatcttctctccacatgctcatttttaaaaccaattatatt---taaccataacaagagagcttattacat 34376315  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 34376360 - 34376405
Alignment:
Q  108 tgatataggtttaaccaatacatgattatttaagaccaacataaaa 153  Q
    ||||||||||||||| |||||||||||| |||||| ||||||||||    
T  34376360 tgatataggtttaactaatacatgattacttaagatcaacataaaa 34376405  T

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