View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2388_low_1 (Length: 603)

Name: NF2388_low_1
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2388_low_1
NF2388_low_1
[»] chr8 (7 HSPs)
chr8 (379-584)||(8452342-8452547)
chr8 (4-96)||(8452154-8452246)
chr8 (1-113)||(479157-479269)
chr8 (1-113)||(7126195-7126307)
chr8 (1-113)||(40589800-40589912)
chr8 (1-113)||(43319115-43319227)
chr8 (112-140)||(8452249-8452277)
[»] chr1 (3 HSPs)
chr1 (148-292)||(3822760-3822904)
chr1 (1-93)||(5608313-5608405)
chr1 (150-183)||(2191281-2191314)
[»] chr5 (7 HSPs)
chr5 (148-289)||(15362608-15362749)
chr5 (205-297)||(34573180-34573272)
chr5 (151-288)||(36059391-36059528)
chr5 (1-93)||(8387073-8387165)
chr5 (148-292)||(30008091-30008235)
chr5 (205-292)||(29966563-29966650)
chr5 (1-93)||(20203952-20204044)
[»] chr2 (3 HSPs)
chr2 (205-298)||(4051541-4051634)
chr2 (1-113)||(39829030-39829142)
chr2 (1-109)||(87333-87441)
[»] chr4 (9 HSPs)
chr4 (1-113)||(56062974-56063086)
chr4 (2-93)||(55734002-55734093)
chr4 (1-93)||(28538887-28538979)
chr4 (1-113)||(49950295-49950407)
chr4 (1-110)||(2063747-2063856)
chr4 (8-93)||(26423272-26423357)
chr4 (209-298)||(50501950-50502039)
chr4 (1-108)||(28425172-28425279)
chr4 (31-113)||(51260659-51260741)
[»] chr3 (2 HSPs)
chr3 (205-297)||(2138432-2138524)
chr3 (201-292)||(35239561-35239652)
[»] chr7 (2 HSPs)
chr7 (1-93)||(16096331-16096423)
chr7 (4-113)||(3746221-3746327)
[»] chr6 (2 HSPs)
chr6 (1-113)||(19365040-19365150)
chr6 (1-113)||(11732748-11732860)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 379 - 584
Target Start/End: Original strand, 8452342 - 8452547
Alignment:
Q  379 aaacttgtgattaattccaaggcatgtttgtgttgagatagaacaattccaaacttggatttggctacctccaagccaagaaagaatttaagtttgctga 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8452342 aaacttgtgattaattccaaggcatgtttgtgttgagatagaacaattccaaacttggatttggctacctccaagccaagaaagaatttaagtttgctga 8452441  T
Q  479 gatccgtgatcttaaattgttgatcgaaaaactcgtgatataattaatatcttcaagatggttaccagtcaaaaaccacatcatcagcataaaccaggag 578  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8452442 gatccttgatcttaaattgttgatcgaaaaactcgtgatataattaatatcttcaagatggttaccagtcaaaaaccacatcatcagcataaaccaggag 8452541  T
Q  579 gagaat 584  Q
    ||||||    
T  8452542 gagaat 8452547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 8452154 - 8452246
Alignment:
Q  4 ccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacg 96  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||| |||| |||||| ||||||||||    
T  8452154 ccatgaatcattcatcacactaacctgctgcccatatccaattgtccacctacatcaatataatagtaactgacacgaattctaaatactacg 8452246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 479157 - 479269
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    ||||||||||||||| || || || |||||||||||||||||||||||||||||| |  ||| ||| |||| | |||| ||| |||||||||| || ||     
T  479157 aacccatggatcatttataacgctgacctgctgcccatgtccaattgtccacctagaaccatgtaaaagtagctgacacgaagtccaaatactccgccaa 479256  T
Q  101 gcaaagctcgggt 113  Q
    |||||||||||||    
T  479257 gcaaagctcgggt 479269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 7126307 - 7126195
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    |||||| ||||||||||||||||| || || |||||| ||||||| ||||| |||||| ||||||| |||||  | |  |||||||||||||| || ||     
T  7126307 aacccacggatcattcatcacactgacatgttgcccacgtccaatcgtccatctacacccatataaaagtaaatgtcgcgaattccaaatacttcgccaa 7126208  T
Q  101 gcaaagctcgggt 113  Q
    |||||||||||||    
T  7126207 gcaaagctcgggt 7126195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 40589800 - 40589912
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    ||||||||| ||||||||||| || ||||||||||||| ||| ||||||||||||||  ||| ||| |||| | |||   ||||||||||||| || ||     
T  40589800 aacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaagtatctgacgcaaattccaaatactccgccaa 40589899  T
Q  101 gcaaagctcgggt 113  Q
    |||||||||||||    
T  40589900 gcaaagctcgggt 40589912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 43319115 - 43319227
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    |||||||||||||||||| || || || |||| |||||||||||||||||||||| |  ||| ||| |||| | |||  ||| |||||||||| || ||     
T  43319115 aacccatggatcattcataacgctgacatgcttcccatgtccaattgtccacctaaaaccatgtaaaagtagctgacgcgaagtccaaatactccgccaa 43319214  T
Q  101 gcaaagctcgggt 113  Q
    |||||||||||||    
T  43319215 gcaaagctcgggt 43319227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 8452249 - 8452277
Alignment:
Q  112 gtacctgaattgtttttatcaattgggta 140  Q
    |||||||||||||||||||||||||||||    
T  8452249 gtacctgaattgtttttatcaattgggta 8452277  T

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Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 148 - 292
Target Start/End: Complemental strand, 3822904 - 3822760
Alignment:
Q  148 tggtgtgtttggaatcacggctggaacaccttttgcgcttacctaggcacttctcaccgtgatttaaagaagcttgaaaagctagcttctccttcaacgt 247  Q
    ||||||||||||||||| |||  ||||| ||||||||||| | |||  |||||||||||||||||||| ||  ||||||||||| ||| | ||  |||||    
T  3822904 tggtgtgtttggaatcatggccagaacatcttttgcgcttccttagatacttctcaccgtgatttaaaaaaatttgaaaagctaacttttactcaaacgt 3822805  T
Q  248 gggtatttgccgctgaagtgataaattaaccgcttgcacaaacat 292  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  3822804 gggtttttgccgctgaagtgataaattaaccgcttgcacaaacat 3822760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5608405 - 5608313
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatact 93  Q
    ||||||||| ||||||||||| || ||||||||||||| ||||| ||||||||||||  ||| ||| |||| | |||  ||||||||||||||    
T  5608405 aacccatgggtcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatgtaaaagtatctgacgcgaattccaaatact 5608313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 2191314 - 2191281
Alignment:
Q  150 gtgtgtttggaatcacggctggaacaccttttgc 183  Q
    ||||||||||||||||||||||||||||||||||    
T  2191314 gtgtgtttggaatcacggctggaacaccttttgc 2191281  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 148 - 289
Target Start/End: Complemental strand, 15362749 - 15362608
Alignment:
Q  148 tggtgtgtttggaatcacggctggaacaccttttgcgcttacctaggcacttctcaccgtgatttaaagaagcttgaaaagctagcttctccttcaacgt 247  Q
    ||||||||||||| |||||||   |||||||||| | | | || ||||| || | | |||||||||||||||||| ||||| |||||||||||  |||||    
T  15362749 tggtgtgtttggattcacggccaaaacaccttttccacgtcccgaggcaatttttaacgtgatttaaagaagcttcaaaaggtagcttctcctcaaacgt 15362650  T
Q  248 gggtatttgccgctgaagtgataaattaaccgcttgcacaaa 289  Q
    |||| |||||||||||| |||||||| |||||||||||||||    
T  15362649 gggtttttgccgctgaattgataaatcaaccgcttgcacaaa 15362608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 34573180 - 34573272
Alignment:
Q  205 cgtgatttaaagaagcttgaaaagctagcttctccttcaacgtgggtatttgccgctgaagtgataaattaaccgcttgcacaaacatcctat 297  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||| |||||||||||| | |||||| |||||||||||||||||| ||||    
T  34573180 cgtgatttaaagaagcttcaaaagatagcttctcctcaaacgtgggtttttgccgctgaattaataaatcaaccgcttgcacaaacatgctat 34573272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 151 - 288
Target Start/End: Original strand, 36059391 - 36059528
Alignment:
Q  151 tgtgtttggaatcacggctggaacaccttttgcgcttacctaggcacttctcaccgtgatttaaagaagcttgaaaagctagcttctccttcaacgtggg 250  Q
    |||||||||| ||||| |  ||||||||||||| | | || ||||| |||||||| |||||||||||||||  ||||| |||||| |||| ||||||||     
T  36059391 tgtgtttggattcacgacatgaacaccttttgcacgtcccgaggcatttctcaccatgatttaaagaagctccaaaaggtagcttttcctccaacgtggc 36059490  T
Q  251 tatttgccgctgaagtgataaattaaccgcttgcacaa 288  Q
    | ||||| ||| ||||||||||| | ||||||||||||    
T  36059491 tttttgctgctcaagtgataaatcatccgcttgcacaa 36059528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 8387165 - 8387073
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatact 93  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||  ||||||| |||||  |||  ||||||||||||||    
T  8387165 aacccatggatcattcatcacactgacctgctgcccatttccaattgtgcatctacatccatataaaagtaattgacgcgaattccaaatact 8387073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 292
Target Start/End: Original strand, 30008091 - 30008235
Alignment:
Q  148 tggtgtgtttggaatcacggctggaacaccttttgcgcttacctaggcacttctcaccgtgatttaaagaagcttgaaaagctagcttctccttcaacgt 247  Q
    ||||||||||||| |||||||   |||||||||| | | | || ||| | || | | |||||||||||||||||| ||||| ||||||||| |  |||||    
T  30008091 tggtgtgtttggattcacggccaaaacaccttttccacgtcccgaggtaatttttaacgtgatttaaagaagcttcaaaaggtagcttctcttcaaacgt 30008190  T
Q  248 gggtatttgccgctgaagtgataaattaaccgcttgcacaaacat 292  Q
    |||| |||  | ||||| |||||||| ||||||||||||||||||    
T  30008191 gggtttttatcactgaattgataaatcaaccgcttgcacaaacat 30008235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 205 - 292
Target Start/End: Complemental strand, 29966650 - 29966563
Alignment:
Q  205 cgtgatttaaagaagcttgaaaagctagcttctccttcaacgtgggtatttgccgctgaagtgataaattaaccgcttgcacaaacat 292  Q
    |||||||||||||||||| ||||| ||||||||| |  ||||||||| |||  | ||||| |||||||| ||||||||||||||||||    
T  29966650 cgtgatttaaagaagcttcaaaaggtagcttctcttcaaacgtgggtttttatcactgaattgataaatcaaccgcttgcacaaacat 29966563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 20204044 - 20203952
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatact 93  Q
    ||||||||||||||||||||| || |  |||||||||| ||||| ||||||||||||  | ||||| |||||| |||  ||||||||||||||    
T  20204044 aacccatggatcattcatcacgctgatttgctgcccatttccaaatgtccacctacatccgtataaaagtaactgacgcgaattccaaatact 20203952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 4051541 - 4051634
Alignment:
Q  205 cgtgatttaaagaagcttgaaaagctagcttctccttcaacgtgggtatttgccgctgaagtgataaattaaccgcttgcacaaacatcctata 298  Q
    |||||||||||||||||| ||||| |||||||||||  ||||||||| ||||| |||||| |||||||| |||||||||||||||||| |||||    
T  4051541 cgtgatttaaagaagcttcaaaaggtagcttctcctcaaacgtgggtttttgcagctgaattgataaatcaaccgcttgcacaaacatgctata 4051634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 39829030 - 39829142
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    |||||| |||||||||||||| || ||||| ||||||| |||||| ||||| |||||  ||||||| |||||| |||| |||||||||||||| || ||     
T  39829030 aacccacggatcattcatcacgctgacctgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacacgaattccaaatactccgccaa 39829129  T
Q  101 gcaaagctcgggt 113  Q
    |||||||| ||||    
T  39829130 gcaaagcttgggt 39829142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 87441 - 87333
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    ||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||  ||| ||| |||| | |||  |||||||| ||||| || ||     
T  87441 aacccatggatcattcatcacgctaacctgctgcccatttccaactgttcacctacatccatgtaaaagtatctgacgcgaattccatatactccgccaa 87342  T
Q  101 gcaaagctc 109  Q
    |||||||||    
T  87341 gcaaagctc 87333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 56063086 - 56062974
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    ||||||||||||||||||||| || ||||||||||||| | |||||||||| |||||  ||||||| |||||| |||  |||||||||||||| | |||     
T  56063086 aacccatggatcattcatcacgctgacctgctgcccattttcaattgtccatctacatccatataaaagtaactgacgcgaattccaaatactccttcaa 56062987  T
Q  101 gcaaagctcgggt 113  Q
    |||||||||||||    
T  56062986 gcaaagctcgggt 56062974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 55734093 - 55734002
Alignment:
Q  2 acccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatact 93  Q
    |||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||  ||||||| || ||| |||  ||||||||||||||    
T  55734093 acccatggatcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatataaaagcaactgacgtgaattccaaatact 55734002  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28538887 - 28538979
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatact 93  Q
    ||||||||||||||||||||| || ||||||||||||| ||||| |||||| |||||  ||||||| |||||| ||   ||||||||||||||    
T  28538887 aacccatggatcattcatcacgctgacctgctgcccatttccaactgtccatctacatccatataaaagtaactgatgtgaattccaaatact 28538979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 49950407 - 49950295
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    |||||||||||||||||||||  | || |||| ||||| |||||||||||||||||| | || ||| |||||   ||  |||||||||||||| |||||     
T  49950407 aacccatggatcattcatcacgttgacatgctacccatttccaattgtccacctacatttatgtaaaagtaattcacgcgaattccaaatactccgtcaa 49950308  T
Q  101 gcaaagctcgggt 113  Q
    |||||||||||||    
T  49950307 gcaaagctcgggt 49950295  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2063856 - 2063747
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    ||||||||||||||| ||||| || || |||||||||| | |||||||| |||||||  ||||||| |||| | |||  |||||||||||||| | |||     
T  2063856 aacccatggatcatttatcacgctgacatgctgcccattttcaattgtctacctacatccatataaaagtagctgacgtgaattccaaatactccatcaa 2063757  T
Q  101 gcaaagctcg 110  Q
    ||||||||||    
T  2063756 gcaaagctcg 2063747  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 26423272 - 26423357
Alignment:
Q  8 ggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatact 93  Q
    ||||||||||||||||| || || ||||||| |||||| ||||| |||||  ||||||| |||||| |||  ||||||||||||||    
T  26423272 ggatcattcatcacactgacatgttgcccatctccaatcgtccatctacaaccatataaaagtaactgacgcgaattccaaatact 26423357  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 209 - 298
Target Start/End: Original strand, 50501950 - 50502039
Alignment:
Q  209 atttaaagaagcttgaaaagctagcttctccttcaacgtgggtatttgccgctgaagtgataaattaaccgcttgcacaaacatcctata 298  Q
    |||||||||||||| ||||| ||| || ||||  ||||||||| ||| | |||||| | |||||| |||||||||||||||||| |||||    
T  50501950 atttaaagaagcttcaaaaggtagtttttcctcaaacgtgggtttttactgctgaattaataaatcaaccgcttgcacaaacatactata 50502039  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 28425279 - 28425172
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    |||||| |||||||||||||   ||||||| ||||||| |||||| ||||| |||||   |||||| |||||| |||  |||||||||||||| || ||     
T  28425279 aacccacggatcattcatcaagttaacctgttgcccatctccaatcgtccatctacaactatataaaagtaactgacgcgaattccaaatactccgccaa 28425180  T
Q  101 gcaaagct 108  Q
    ||||||||    
T  28425179 gcaaagct 28425172  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 113
Target Start/End: Original strand, 51260659 - 51260741
Alignment:
Q  31 ctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcaggcaaagctcgggt 113  Q
    |||||||| |||||||||||| |||||  ||||||| ||||||  ||  |||||||||||||| |  || |||||||||||||    
T  51260659 ctgcccatttccaattgtccatctacatccatataaaagtaacttacgcgaattccaaatactcctccaagcaaagctcgggt 51260741  T

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Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 2138432 - 2138524
Alignment:
Q  205 cgtgatttaaagaagcttgaaaagctagcttctccttcaacgtgggtatttgccgctgaagtgataaattaaccgcttgcacaaacatcctat 297  Q
    ||||||||||||||| || ||||| |||||||||||  |||||| || |||||||||||| |||||||| |||||||| ||||||||| ||||    
T  2138432 cgtgatttaaagaagtttcaaaagatagcttctcctcaaacgtgagtttttgccgctgaattgataaataaaccgcttacacaaacatgctat 2138524  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 292
Target Start/End: Complemental strand, 35239652 - 35239561
Alignment:
Q  201 tcaccgtgatttaaagaagcttgaaaagctagcttctccttcaacgtgggtatttgccgctgaagtgataaattaaccgcttgcacaaacat 292  Q
    |||||||||||||||||||||| ||||| || |||||||| |||||  ||| || |||||| ||||||||| |  |||||||| ||||||||    
T  35239652 tcaccgtgatttaaagaagctttaaaaggtaacttctcctccaacgcaggttttggccgctaaagtgataattccaccgcttgaacaaacat 35239561  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16096423 - 16096331
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatact 93  Q
    |||||||||||| |||||||| || |||||||  |||| ||||||||||||||||||  ||||||| |||||| | || ||||||||||||||    
T  16096423 aacccatggatctttcatcacgctgacctgctatccatttccaattgtccacctacatccatataacagtaactggcacgaattccaaatact 16096331  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 3746327 - 3746221
Alignment:
Q  4 ccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcaggca 103  Q
    |||||||||||||||||| || || ||    |||||||||||||||||||||||   |||||| |||||| |||  |||||||||||||| || || |||    
T  3746327 ccatggatcattcatcacgctgacatga---ccatgtccaattgtccacctacaacaatataaaagtaactgacgcgaattccaaatactccgccaagca 3746231  T
Q  104 aagctcgggt 113  Q
    ||||| ||||    
T  3746230 aagctagggt 3746221  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 19365040 - 19365150
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    |||| ||||||||||||||||||| || ||||||  || ||||| ||||||||||    ||||||| ||||||  ||  |||||||||||  | || |||    
T  19365040 aaccaatggatcattcatcacactgacatgctgcaaatttccaactgtccacctaattccatataaaagtaaccaacgcgaattccaaat--ttcgccag 19365137  T
Q  101 gcaaagctcgggt 113  Q
    |||||||||||||    
T  19365138 gcaaagctcgggt 19365150  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 11732748 - 11732860
Alignment:
Q  1 aacccatggatcattcatcacactaacctgctgcccatgtccaattgtccacctacactcatataatagtaacagacaagaattccaaatactacgtcag 100  Q
    |||||||  |||||||||||| |  || |||||||||| || |||| ||||||||||  ||| ||| | |||| |||  |||||||||||||| |  |||    
T  11732748 aacccattaatcattcatcacgccgacatgctgcccatttctaattatccacctacatccatgtaaaactaactgacgcgaattccaaatactccaccag 11732847  T
Q  101 gcaaagctcgggt 113  Q
    | |||||||||||    
T  11732848 gaaaagctcgggt 11732860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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