View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_11 (Length: 264)
Name: NF2388_low_11
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 44871503 - 44871264
Alignment:
| Q |
17 |
aagagggaaggtattaaagaggggaggtataagggaaagttattccattg------ggttgatagagaataaagttttggtttcagggactcatgtgttc |
110 |
Q |
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| T |
44871503 |
aagagggaaggtattaaagaggggaggtataagggaaagttattccattgtttcttggttgatagagaataaagttttggtttcaggaactcatgtgttc |
44871404 |
T |
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| Q |
111 |
tgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggatttgagg |
210 |
Q |
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| T |
44871403 |
tgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggatttgagg |
44871304 |
T |
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| Q |
211 |
ctcatgctggttgtacaagacacagaccatccattagtat |
250 |
Q |
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| T |
44871303 |
ctcatgctggttgtacaagacacagaccatccattagtat |
44871264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 67 - 250
Target Start/End: Original strand, 47522832 - 47523015
Alignment:
| Q |
67 |
ggttgatagagaataaagttttggtttcagggactcatgtgttctgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagt |
166 |
Q |
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| T |
47522832 |
ggttgataaagaatcaagttttggtttcagggactaatgtattctgtcgtggtagaaacaatgttgtcaaaagagggggtttattttctgatggcatagt |
47522931 |
T |
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| Q |
167 |
ttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttgtacaagacacagaccatccattagtat |
250 |
Q |
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| T |
47522932 |
ttgtgattgttgtcgtgttaatttcaatgtcactggatttgaggctcatgctggttgtacaagacatagaccaaccactagtat |
47523015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 47528286 - 47528506
Alignment:
| Q |
17 |
aagagggaaggtattaaagaggggaggtataagggaaagttattccattg------ggttgatagagaataaagttttggtttcagggactcatgtgttc |
110 |
Q |
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||||||||||||||||||||| | ||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||| ||||| || |
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| T |
47528286 |
aagagggaaggtattaaagagagaaggtataagggaaaggtattcacttgtttcttggttgataaagaataaagttttggtttcagggactaatgtgctc |
47528385 |
T |
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| Q |
111 |
tgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagtttgtaactgttgtcgtgttaatttcaccgtcagtggatttgagg |
210 |
Q |
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| T |
47528386 |
tgtcgtggtagtaacaatgttgttacaagcgggagtatatattgtgatggtattgtttgtgattgttgtaatgttaatttcactctcgctggatttaagg |
47528485 |
T |
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| Q |
211 |
ctcatgctggttgtacaagac |
231 |
Q |
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| T |
47528486 |
atcatgctggttgtacaagac |
47528506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 250
Target Start/End: Complemental strand, 9820639 - 9820456
Alignment:
| Q |
67 |
ggttgatagagaataaagttttggtttcagggactcatgtgttctgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagt |
166 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||||||| || ||| | || ||||||||||||| ||| | |||||||||| |||||| |
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| T |
9820639 |
ggttgataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctgatgctatagt |
9820540 |
T |
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| Q |
167 |
ttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttgtacaagacacagaccatccattagtat |
250 |
Q |
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| T |
9820539 |
ttgtgattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccactagtat |
9820456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 250
Target Start/End: Original strand, 9853341 - 9853524
Alignment:
| Q |
67 |
ggttgatagagaataaagttttggtttcagggactcatgtgttctgtcgtggtagtgaaaatattgtcaaaagagggagtatattttctgatggtatagt |
166 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||||||| || ||| | || ||||||||||||| ||| | |||||||||| |||||| |
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| T |
9853341 |
ggttgataaagaatcaagttttggtttcagggactaatgtgttctgtcagggcagtaacaaagttgtcaaaagaggaagtttgttttctgatgctatagt |
9853440 |
T |
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| Q |
167 |
ttgtaactgttgtcgtgttaatttcaccgtcagtggatttgaggctcatgctggttgtacaagacacagaccatccattagtat |
250 |
Q |
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| T |
9853441 |
ttgtgattgttgtcatgttacctttactatcaccgggttcgagtctcatgctggttgtacaagacatagaccatccactagtat |
9853524 |
T |
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