View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2388_low_12 (Length: 254)
Name: NF2388_low_12
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31777250 - 31777487
Alignment:
| Q |
1 |
ttcatcaatttttaagggataccgtttcttaggttatttacattaatttattgattctatttcgctgattgtt-acttataataataattctgattcatc |
99 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
31777250 |
ttcatcaatttttaaggtataccgtttcttaggttatttacattaatttattgattctatttcgttgattgtttacttataataataattctgattcatc |
31777349 |
T |
|
| Q |
100 |
agaattttgttgaatattgtttgttctatgtatgatgagtttgaatcttgttgtataatggttcatcaattttgtgctaataattgttctttatatttca |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31777350 |
agaattttgttgaatattgtttgttctatgtatgatgagtttgaatcttgttgtataatggttcatcaattttgtgctaataattgttctttatatttca |
31777449 |
T |
|
| Q |
200 |
ataaatttattaacaggttattttctgcatccaatttc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31777450 |
ataaatttattaacaggttattttctgcatccaatttc |
31777487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University