View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_14 (Length: 247)
Name: NF2388_low_14
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_14 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 32 - 235
Target Start/End: Original strand, 46168 - 46371
Alignment:
| Q |
32 |
agctattgtttgtttgcacgttgaaatgtggcaaacgttcgtttgcaagactaaacctgagtttgttttgctaaatatgtgtttgagtgtctttttaaaa |
131 |
Q |
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|||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||| || |
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| T |
46168 |
agctattgtttggttgcacgttgaaatgtagcaaacgtacgtttgcaagactaaatgtgagcctgttttgctaaatatgtgtttgggtgtctttttggaa |
46267 |
T |
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| Q |
132 |
aatcaattctggccatctaaatcaattccagcagaagcaaaggatagtagcttctgcggcaatgtaaatcgattattacttttcttcccctactgtcctt |
231 |
Q |
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|||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46268 |
aatcaactgtggccatcaaaatcaattccagcagaagcaaagaatagtagcttctgcggcaatgtaaatcgattattacttttcttcccctactgtcctt |
46367 |
T |
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| Q |
232 |
gtat |
235 |
Q |
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|||| |
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| T |
46368 |
gtat |
46371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 40903850 - 40903647
Alignment:
| Q |
32 |
agctattgtttgtttgcacgttgaaatgtggcaaacgttcgtttgcaagactaaacctgagtttgttttgctaaatatgtgtttgagtgtctttttaaaa |
131 |
Q |
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|||||||||||| |||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||||||| || |
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| T |
40903850 |
agctattgtttggttgcacgttgaaatgtagcaaacgtacgtttgcaagactaaatgtgagcctgttttgctaaatatgtgtttgggtgtctttttggaa |
40903751 |
T |
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| Q |
132 |
aatcaattctggccatctaaatcaattccagcagaagcaaaggatagtagcttctgcggcaatgtaaatcgattattacttttcttcccctactgtcctt |
231 |
Q |
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| T |
40903750 |
aatcaactgtggccatcaaaatcaattccagcagaagcaaagaatagtagcttctgcggcaatgtaaatcgattattacttttcttcccctactgtcctt |
40903651 |
T |
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| Q |
232 |
gtat |
235 |
Q |
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|||| |
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| T |
40903650 |
gtat |
40903647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 45424382 - 45424300
Alignment:
| Q |
31 |
aagctattgtttgtttgcacgttgaaatgtggcaaacgttcgtttgcaagactaaacctgagtttgttttgctaaatatgtgt |
113 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
45424382 |
aagctattgtttggttgcacgttgaaatgtggcaaacgtacgtttgcaagactaaacgtgagtctgttttgctaaatatgtgt |
45424300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 45424300 - 45424251
Alignment:
| Q |
186 |
tgcggcaatgtaaatcgattattacttttcttcccctactgtccttgtat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45424300 |
tgcggcaatgtaaatcgattattacttttcttcccctactgtccttgtat |
45424251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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