View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_15 (Length: 244)
Name: NF2388_low_15
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_15 |
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| [»] scaffold0392 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 39786539 - 39786323
Alignment:
| Q |
19 |
agcaagatcatgaagtaatcaaagagcaagatcgtttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctc |
118 |
Q |
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| T |
39786539 |
agcaagatcatgaagtaatcaaagagcaagatcgtttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctc |
39786440 |
T |
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| Q |
119 |
gaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaagcgcaagaca |
218 |
Q |
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| T |
39786439 |
gaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaagcgcaagaca |
39786340 |
T |
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| Q |
219 |
gtgaatggtgatgatgt |
235 |
Q |
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| T |
39786339 |
gtgaatggtgatgatgt |
39786323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 36970958 - 36970909
Alignment:
| Q |
177 |
ggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatgg |
226 |
Q |
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| T |
36970958 |
ggtgaagcatctgacaagtgtcacaaggagaatcgcaagaccgttaatgg |
36970909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 56067949 - 56068074
Alignment:
| Q |
108 |
gcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggaga |
207 |
Q |
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| T |
56067949 |
gcaaagatatcgaaagaagctaaagaaacgatgcaagagtgtgtatcagagttcataagcttcataacaggtgaagcatctgaaaagtgtcagaaagaga |
56068048 |
T |
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| Q |
208 |
agcgcaagacagtgaatggtgatgat |
233 |
Q |
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| T |
56068049 |
agaggaagacaataaacggtgatgat |
56068074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 49536840 - 49536667
Alignment:
| Q |
60 |
ccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagt |
159 |
Q |
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| T |
49536840 |
ccaatagcaaatgttgggaggataatgaagcagatattaccacagaatgcaaaaatctcaaaggaatcaaaggaaacaatgcaagagtgtgtgtcagagt |
49536741 |
T |
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| Q |
160 |
ttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaagcgcaagacagtgaatggtgatgat |
233 |
Q |
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| T |
49536740 |
ttataagctttgtgacaagtgaagcatcagagaaatgcaggaaggaaaggagaaagacagtgaatggtgatgat |
49536667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 9722620 - 9722788
Alignment:
| Q |
41 |
agagcaagatcgtttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctcgaaagatgctaaagaaaccatg |
140 |
Q |
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| T |
9722620 |
agagcaagataggtttcttccaatagcaaacgtgagtaggatcatgaaaaaggctttaccagcaaacgcaaagatctcaaaagaagcaaaagaaacagta |
9722719 |
T |
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| Q |
141 |
caagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtcacaaggagaag |
209 |
Q |
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| T |
9722720 |
caagagtgtgtatcagagtttatcagtttcataactggagaagcttctgataagtgtcagaaagagaag |
9722788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 38281624 - 38281720
Alignment:
| Q |
103 |
caaatgcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatctgacaagtgtca |
199 |
Q |
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| T |
38281624 |
caaatgctaaaatctcaaaagaagcaaaagaaacggttcaagaatgtgtctctgagttcattagtttcattactggtgaagcttctgataagtgtca |
38281720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 39304474 - 39304622
Alignment:
| Q |
39 |
aaagagcaagatcgtttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctcgaaagatgctaaagaaacca |
138 |
Q |
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| T |
39304474 |
aaagaacaagatcgttttcttcctatagcaaatgttggtagaataatgaaaaaagttattcctgcaaatggaaaaatctcaaaggatgcaaaagagacag |
39304573 |
T |
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| Q |
139 |
tgcaagagtgtgtctcagagtttgttagttttgtaactggtgaagcatc |
187 |
Q |
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| T |
39304574 |
ttcaagaatgtgtgtcggagttcataagttttgtcaccggggaagcatc |
39304622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0392 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0392
Description:
Target: scaffold0392; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 14873 - 14767
Alignment:
| Q |
54 |
ttgcttccaatagctaatgttggtaggatcatgaaacaaatcttgcctccaaatgcaaaaatctcgaaagatgctaaagaaaccatgcaagagtgtgtct |
153 |
Q |
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|||||||||||||| ||||||||| |||| ||||| || || ||||||| ||||| ||| | ||||| || || || ||||| |||||||| ||||| | |
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| T |
14873 |
ttgcttccaatagccaatgttggtcggataatgaagcagattttgcctcagaatgcgaaagtatcgaaggaagcaaaggaaacaatgcaagaatgtgtgt |
14774 |
T |
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| Q |
154 |
cagagtt |
160 |
Q |
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| T |
14773 |
ccgagtt |
14767 |
T |
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