View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_17 (Length: 235)
Name: NF2388_low_17
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 1616732 - 1616947
Alignment:
| Q |
1 |
aaccaaattgcatatcttataatcctcttttgataatagaggttaatataacccaaagaaactaaaaatgcttcacataatagtgcacgaacttggagtc |
100 |
Q |
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| T |
1616732 |
aaccaaattgcatatcttataatcctcttttgataatagaggttaatataacccaaagaaactaaaaatgcttcacataatagtgcacgaacatggtgtc |
1616831 |
T |
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| Q |
101 |
caaaatgggtgaaccgatgctggaggtggtggttgagggaatggcaataatggtgtctcatagtaagcttgatagctagtgtaaggatcaactctcccat |
200 |
Q |
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| T |
1616832 |
caaaatgggtgaaccgatgctggaggtggtggttgagggaatggcaataatggtgtctcatagtaagcttgatagctagtgtaaggatcaactctcccat |
1616931 |
T |
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| Q |
201 |
ggaaagaataccttga |
216 |
Q |
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| T |
1616932 |
ggaaagaataccttga |
1616947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 40050014 - 40049871
Alignment:
| Q |
73 |
tcacataatagtgcacgaacttggagtccaaaatgggtgaaccgatgctggaggtggtggttgagggaatggcaataatggtgtctcatagtaagcttga |
172 |
Q |
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| T |
40050014 |
tcacataatagtgcacgaacttggagtccaaaatgggtgaaccgatgctggtggtggtggttgagggaatgccaatagtggtgtctcatagtaagcttga |
40049915 |
T |
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| Q |
173 |
tagctagtgtaaggatcaactctcccatggaaagaataccttga |
216 |
Q |
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| T |
40049914 |
tagctagtgtaaggatcaactcttccatgaaaagaataccttga |
40049871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 40050153 - 40050080
Alignment:
| Q |
1 |
aaccaaattgcatatcttataatcctcttttgataatagaggttaatataacccaaagaaactaaaaatgcttc |
74 |
Q |
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| T |
40050153 |
aaccaaattgcatatcttataatcctcttttgataatagaggttaatataactcaaagaaactaaaaatgcttc |
40050080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 33251024 - 33251074
Alignment:
| Q |
158 |
tcatagtaagcttgatagctagtgtaaggatcaactctcccatggaaagaa |
208 |
Q |
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| T |
33251024 |
tcatagtaagcttggtagctagggtaaggatcaactcttccatagaaagaa |
33251074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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