View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_18 (Length: 215)
Name: NF2388_low_18
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 43182635 - 43182851
Alignment:
| Q |
1 |
ttgttgaaaaccgtatgggacgaattagaggctttatgccgtattaaagattgtatgtgttctgtgaaatattcttgtggatatctca--gacatcgagt |
98 |
Q |
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| T |
43182635 |
ttgttgaaaaccgtatgggacgaattagaggctttatgccgtattaaagattgtatgtgttctgtgaaatattcttgtggatatctcaaagacatcgagt |
43182734 |
T |
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| Q |
99 |
tgcttcgagattttgaatgtgttgtaaacttgttgaacggtttaagtgatccctacaattttgttaaatcacaaattctacgtatggaactttggcactg |
198 |
Q |
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| T |
43182735 |
tgcttcgagattttgaatgtgttgtaaacttgttgaatggtttaagtgatccctacaattttgttaaatcacaaattctacgtatggaactttggcactg |
43182834 |
T |
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| Q |
199 |
ctaatgatgatgccaaa |
215 |
Q |
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| T |
43182835 |
ctaatgatgatgccaaa |
43182851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 43063625 - 43063493
Alignment:
| Q |
4 |
ttgaaaaccgtatgggacgaattagaggctttatgccgtattaaagattgtatgtgttctgtgaaatattcttgtggatatctcagacatcgagttgctt |
103 |
Q |
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||||||||| | ||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
43063625 |
ttgaaaaccctttgggatgaattataggctttatgccctattaaagattgtatgtgttctgtgaaatattcttctggatatttgcgacatcgagttctaa |
43063526 |
T |
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| Q |
104 |
cgagattttgaatgtgttgtaaacttgttgaac |
136 |
Q |
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| T |
43063525 |
cgaaattctgaatgttttgtaagcttcttgaac |
43063493 |
T |
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