View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_3 (Length: 440)
Name: NF2388_low_3
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Original strand, 47583292 - 47583715
Alignment:
| Q |
7 |
gaaaattgtttgtttcttgtctcttgctcccacattgcagagatggtatacgtggtaaaagtgaaggattgaatgctactcatnnnnnnnntaaaatcct |
106 |
Q |
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| T |
47583292 |
gaaaattgtttgtttcttgtctcttgctcccacattgcagagatggta--cgtggtaaaagtgaaggattgaatgctactcataaaaaaaataaaatcct |
47583389 |
T |
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| Q |
107 |
taatggtgaagaggaaagagaacattcaaaggtagggaaaaaatcaaaatatcaacttatagaatacaattctttgccagctttcttaagggacaatgaa |
206 |
Q |
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| T |
47583390 |
taatggtgaagaggaaagagaacattcaaaggtagggaaaaaatcaaaatatcaacttatagaatacaattctttgccagctttcttaagggacaatgaa |
47583489 |
T |
|
| Q |
207 |
ttcatattagactattatcgatcagagtggccattgaagcagataatcctcagcattttctcaattcataatgagacgcttaatgtctggacgtaagtac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583490 |
ttcatattagactattatcgatcagagtggccattgaagcagataatcctcagcattttctcaattcataatgagacgcttaatgtctggacgtaagtac |
47583589 |
T |
|
| Q |
307 |
ttcatctttaagtacaaacatatttttctttcnnnnnnnnnnnnnnnnnntatatttcattatcttggtatctctagtacttttctagacttctgctttc |
406 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47583590 |
ttcatctttaagtacaaacatatttttctttcaaaaaaaaaagtacaaac-atatttcattatcttggtatctctagtacttttctagacttctgctttc |
47583688 |
T |
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| Q |
407 |
aatttgacaatctatagctcaatagaat |
434 |
Q |
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| T |
47583689 |
-atttgacaatctatagctcaatagaat |
47583715 |
T |
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