View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_6 (Length: 336)
Name: NF2388_low_6
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 28119024 - 28118698
Alignment:
| Q |
1 |
acacaaacacatcctttgattctgtggggaactagcacatcgtaggacacttaggaaaagatgttcatcacaaggaatacatagttttgaatcagccatg |
100 |
Q |
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| T |
28119024 |
acacaaacacatcctttgattctgtggggaactagcacatcgtaggacacttaggaaaagatgttcatgacaaggaatacatagttttgaatcagccatg |
28118925 |
T |
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| Q |
101 |
aaatcatactcttcttgagcttgatccaacaaggctttgaagagtggatgatgaagcaatgcaattttgatcacatatcttttgtgattctctcctacat |
200 |
Q |
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| T |
28118924 |
aaatcatactcttcttgagcttgatccaacaaggctttgaagagtggatgatgaagcaatgcaattttgatcacatatcttttgtgattctctcctacat |
28118825 |
T |
|
| Q |
201 |
atacaaccatgtgaccttttggtacatcacttggtatggagcaactttcatgcagagaagaccataaacctctttcacaacaatcttcacaagtagcaca |
300 |
Q |
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| T |
28118824 |
atacaaccatgtgaccttttggtacatcacttggtatggagcaactttcatgcagagaagaccataaacctctttcacaacaatcttcacaagtagcaca |
28118725 |
T |
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| Q |
301 |
agtttttactatgcttcccatattctt |
327 |
Q |
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| T |
28118724 |
agtttttactatacttcccattttctt |
28118698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 47 - 234
Target Start/End: Original strand, 41010891 - 41011078
Alignment:
| Q |
47 |
acacttaggaaaagatgttcatcacaaggaatacatagttttgaatcagccatgaaatcatactcttcttgagcttgatccaacaaggctttgaagagtg |
146 |
Q |
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||||| |||||||||||||||| ||| |||||||| ||||| ||||| || ||||||||||| |||||| ||||||| ||||||||||| ||||| |||| |
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| T |
41010891 |
acactaaggaaaagatgttcattacatggaatacaaagtttagaatctgcaatgaaatcatattcttctcgagcttgttccaacaaggccttgaaaagtg |
41010990 |
T |
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| Q |
147 |
gatgatgaagcaatgcaattttgatcacatatcttttgtgattctctcctacatatacaaccatgtgaccttttggtacatcacttgg |
234 |
Q |
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||||||| || ||| |||| ||||| ||| |||| || | ||||| |||||||| ||||||| |||||| ||||| |||||| |||| |
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| T |
41010991 |
gatgatggagtaatccaatcttgatgacaaatctcttatagttctcacctacatacacaaccaagtgaccctttggaacatcatttgg |
41011078 |
T |
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