View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2388_low_7 (Length: 331)
Name: NF2388_low_7
Description: NF2388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2388_low_7 |
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| [»] scaffold1211 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 26377881 - 26378182
Alignment:
| Q |
14 |
gaatggttgagtaacttcagtttatatttcttcacaatttggttaacaaaataaataacagaaacaaatattttgcaccaagtgtggagccttgaaacat |
113 |
Q |
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| T |
26377881 |
gaatggttgagtaacttcagtttatatttcttcacaatttggttaacaaaataaataacagaaacaaatattttgcaccaagtgtggagccttgaaacat |
26377980 |
T |
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| Q |
114 |
tttatggttgatgataggggaagtgctgaataatgcaaaccatattcattcttcctttagcatgtagtcatgcaccatctgctattgcaatggaaagaaa |
213 |
Q |
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| T |
26377981 |
tttatggttgatgataggggaagtgctgaataatgcaaaccgtatgcattcttcctttagcatgtagtcatgcaccatctgctattgcaatggaaagaaa |
26378080 |
T |
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| Q |
214 |
tgaaacatctgtgattattagatagctctaannnnnnngatgcaatttaagcattgcgtgattgttctgtatataatgtttgtaagtttcctgcagggtt |
313 |
Q |
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| T |
26378081 |
tgaaacatctgtgattattagatagctctaatttttttgatgcaatttaagcattgcgtgattgttctgtatataatgtttgtaagtttcctgcagggtt |
26378180 |
T |
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| Q |
314 |
gt |
315 |
Q |
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| T |
26378181 |
gt |
26378182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold1211
Description:
Target: scaffold1211; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 244
Target Start/End: Original strand, 1592 - 1726
Alignment:
| Q |
109 |
aacattttatggttgatgataggggaagtgctgaataatgcaaaccatattcattcttcctttagcatgtagtcatgcaccatctgctattgcaatggaa |
208 |
Q |
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| T |
1592 |
aacatttgatagttgatgataggagaattattgaataatgcaaatcatatgggttctgcctttagcatgtagtcatgtaccatctgctattgaaatggaa |
1691 |
T |
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| Q |
209 |
agaaatgaaacatctgtgattattagatagctctaa |
244 |
Q |
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| T |
1692 |
ag-aatgacacatctggaaatattagatagctctaa |
1726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1211; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 1517 - 1558
Alignment:
| Q |
17 |
tggttgagtaacttcagtttatatttcttcacaatttggtta |
58 |
Q |
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| T |
1517 |
tggtcgagtaacttcagtttatatttcttcacaatttggtta |
1558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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