View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2389_high_1 (Length: 685)

Name: NF2389_high_1
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2389_high_1
NF2389_high_1
[»] chr8 (12 HSPs)
chr8 (339-520)||(21525354-21525534)
chr8 (340-521)||(22324593-22324773)
chr8 (339-521)||(35806790-35806971)
chr8 (339-521)||(33934320-33934501)
chr8 (339-521)||(26021391-26021574)
chr8 (343-521)||(42013872-42014049)
chr8 (339-521)||(42072424-42072605)
chr8 (361-418)||(24065291-24065348)
chr8 (339-471)||(19334778-19334910)
chr8 (15-130)||(23556947-23557062)
chr8 (361-427)||(34697433-34697500)
chr8 (361-472)||(43282851-43282962)
[»] chr3 (25 HSPs)
chr3 (339-521)||(40845868-40846049)
chr3 (340-521)||(21853194-21853374)
chr3 (340-521)||(13856096-13856276)
chr3 (339-521)||(44994919-44995101)
chr3 (339-521)||(8950455-8950636)
chr3 (339-521)||(5391453-5391634)
chr3 (339-493)||(32352843-32352996)
chr3 (339-419)||(23467546-23467626)
chr3 (340-491)||(3178699-3178850)
chr3 (340-521)||(36539627-36539809)
chr3 (340-520)||(1781757-1781938)
chr3 (340-520)||(20382514-20382693)
chr3 (340-471)||(43347337-43347468)
chr3 (339-417)||(10839434-10839514)
chr3 (339-427)||(33103738-33103827)
chr3 (340-416)||(19649427-19649506)
chr3 (344-419)||(54546904-54546980)
chr3 (349-419)||(22845414-22845484)
chr3 (435-521)||(27642751-27642837)
chr3 (341-419)||(8926762-8926842)
chr3 (363-418)||(46685836-46685891)
chr3 (365-405)||(51336231-51336271)
chr3 (350-427)||(47889731-47889810)
chr3 (340-404)||(36826021-36826087)
chr3 (339-419)||(48206848-48206930)
[»] chr2 (19 HSPs)
chr2 (339-521)||(42769709-42769890)
chr2 (339-521)||(14186389-14186570)
chr2 (340-521)||(29846439-29846619)
chr2 (339-521)||(14941995-14942176)
chr2 (339-521)||(40277239-40277420)
chr2 (339-521)||(19181544-19181725)
chr2 (339-420)||(3597918-3597999)
chr2 (442-521)||(3597841-3597920)
chr2 (339-419)||(1387340-1387421)
chr2 (340-467)||(6318463-6318592)
chr2 (340-520)||(3956567-3956748)
chr2 (364-419)||(43139766-43139823)
chr2 (339-478)||(33009666-33009807)
chr2 (339-427)||(14539748-14539838)
chr2 (340-419)||(40780050-40780131)
chr2 (339-416)||(41674761-41674841)
chr2 (340-416)||(28321758-28321836)
chr2 (340-427)||(23685414-23685503)
chr2 (340-419)||(32486239-32486320)
[»] chr7 (14 HSPs)
chr7 (340-521)||(34707113-34707293)
chr7 (339-521)||(44164694-44164875)
chr7 (339-527)||(10576669-10576856)
chr7 (351-521)||(34259526-34259695)
chr7 (339-521)||(29238094-29238275)
chr7 (339-482)||(24320429-24320571)
chr7 (339-521)||(29555890-29556071)
chr7 (339-471)||(32876531-32876662)
chr7 (358-521)||(29981064-29981226)
chr7 (340-482)||(33057647-33057789)
chr7 (340-520)||(19334512-19334693)
chr7 (340-416)||(10334173-10334251)
chr7 (340-414)||(17303171-17303248)
chr7 (340-416)||(26284433-26284510)
[»] chr5 (21 HSPs)
chr5 (340-519)||(38397595-38397773)
chr5 (339-521)||(6257361-6257542)
chr5 (339-521)||(37168984-37169165)
chr5 (339-521)||(23218481-23218662)
chr5 (339-521)||(39862438-39862619)
chr5 (340-521)||(16618521-16618701)
chr5 (343-521)||(15631613-15631791)
chr5 (340-529)||(8456906-8457096)
chr5 (340-520)||(10081140-10081323)
chr5 (343-427)||(614436-614522)
chr5 (340-516)||(25560284-25560460)
chr5 (339-511)||(36769035-36769207)
chr5 (361-419)||(6174762-6174820)
chr5 (340-427)||(11856290-11856379)
chr5 (361-427)||(9738027-9738094)
chr5 (339-418)||(27916133-27916215)
chr5 (361-471)||(3341121-3341230)
chr5 (340-417)||(42119617-42119696)
chr5 (364-417)||(33271324-33271377)
chr5 (363-419)||(29491465-29491521)
chr5 (362-406)||(33188407-33188451)
[»] chr1 (20 HSPs)
chr1 (339-521)||(7742730-7742911)
chr1 (339-521)||(48392357-48392538)
chr1 (339-521)||(42517245-42517430)
chr1 (339-521)||(49902464-49902645)
chr1 (343-517)||(5974988-5975161)
chr1 (339-521)||(10155967-10156148)
chr1 (339-521)||(47022698-47022879)
chr1 (339-521)||(3346782-3346963)
chr1 (339-521)||(29149509-29149680)
chr1 (340-521)||(23908282-23908452)
chr1 (343-520)||(38859849-38860027)
chr1 (340-482)||(10907638-10907781)
chr1 (339-418)||(26835332-26835413)
chr1 (361-426)||(30745361-30745427)
chr1 (361-426)||(30766812-30766878)
chr1 (368-419)||(5558334-5558385)
chr1 (361-427)||(30252789-30252856)
chr1 (362-404)||(8430508-8430551)
chr1 (25-111)||(27587500-27587586)
chr1 (339-419)||(44107440-44107522)
[»] chr4 (24 HSPs)
chr4 (339-521)||(1535767-1535948)
chr4 (339-521)||(37801215-37801396)
chr4 (339-517)||(49284353-49284530)
chr4 (339-482)||(25954746-25954888)
chr4 (343-482)||(34240993-34241131)
chr4 (339-521)||(52632514-52632685)
chr4 (339-521)||(35018932-35019112)
chr4 (339-521)||(36012137-36012317)
chr4 (366-521)||(16338164-16338318)
chr4 (340-520)||(17888502-17888683)
chr4 (340-406)||(16338309-16338375)
chr4 (340-520)||(31377385-31377565)
chr4 (343-419)||(46583593-46583669)
chr4 (435-517)||(36851342-36851424)
chr4 (340-419)||(322601-322682)
chr4 (340-520)||(11054448-11054631)
chr4 (340-416)||(54090176-54090253)
chr4 (340-417)||(35322758-35322837)
chr4 (361-520)||(20818584-20818743)
chr4 (339-480)||(46473988-46474130)
chr4 (345-419)||(9742585-9742661)
chr4 (339-417)||(50328790-50328870)
chr4 (339-419)||(12792283-12792365)
chr4 (361-414)||(19124795-19124849)
[»] chr6 (15 HSPs)
chr6 (339-521)||(24694602-24694783)
chr6 (339-521)||(13627536-13627717)
chr6 (340-521)||(9231805-9231985)
chr6 (339-519)||(14309752-14309930)
chr6 (369-481)||(1727924-1728035)
chr6 (339-392)||(11084606-11084659)
chr6 (361-426)||(11212689-11212754)
chr6 (435-521)||(11084681-11084766)
chr6 (339-416)||(27863694-27863772)
chr6 (340-404)||(11279536-11279601)
chr6 (340-520)||(28750602-28750783)
chr6 (361-416)||(34103703-34103758)
chr6 (345-416)||(13103173-13103246)
chr6 (343-404)||(24500767-24500830)
chr6 (452-520)||(34383363-34383431)
[»] scaffold0079 (2 HSPs)
scaffold0079 (366-521)||(54542-54696)
scaffold0079 (340-406)||(54485-54551)
[»] scaffold0045 (1 HSPs)
scaffold0045 (361-467)||(34457-34563)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 5e-61; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 339 - 520
Target Start/End: Original strand, 21525354 - 21525534
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||       ||||    
T  21525354 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatat-aagaaattca 21525452  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    || ||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  21525453 tagggatttacacaagaaattgcaaaaaatttgacccggagccctggcgagtgcccggggtcaccgggccttagaaccgccc 21525534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 340 - 521
Target Start/End: Original strand, 22324593 - 22324773
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||||    
T  22324593 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattcat 22324691  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | |||||||||||||||||| |||||||||||  ||||||||| ||||| |||| |||||  ||||||||||||||||||||    
T  22324692 agggatttacacaagaaattacaaaaaatttggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccc 22324773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 35806790 - 35806971
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  35806790 tttgcaacacatttatagggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 35806888  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||  |||||||||||||||||||||||||||||  ||||||||| | ||| |||| |||||| ||||||||||||||||||||    
T  35806889 tagagatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccc 35806971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 33934501 - 33934320
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||  ||||||       ||||    
T  33934501 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgcccaatttataggggtttatat-aagaaattca 33934403  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || | ||||||| ||||||||||||||||||||  | ||||||| ||||| |||| |||||| |||||||||| |||||||||    
T  33934402 taggaatttacaaaagaaattgcaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttaaaaccgcccc 33934320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 26021391 - 26021574
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||  ||||||       |||    
T  26021391 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatat-aagaaattc 26021489  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcacc-gggccttagaaccgcccc 521  Q
    ||| ||||||||| ||||||||||||||||||||   |||||||| ||| | |||| ||||||||| ||||||||||||||||||    
T  26021490 atagggatttacaaaagaaattgcaaaaaatttggcacggagcccgggctagtgcccggggtcaccggggccttagaaccgcccc 26021574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 343 - 521
Target Start/End: Original strand, 42013872 - 42014049
Alignment:
Q  343 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataag 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||   ||||||       |||||| |    
T  42013872 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgcccaatttataggagtttatat-aagaaattcatagg 42013970  T
Q  443 gatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    |||||||||||||||||||||||||||||  ||| | ||| | | | |||| |||||| ||||||||||||||||||||    
T  42013971 gatttacacaagaaattgcaaaaaatttggcccgaaacccggacaagtgcccggggtcgccgggccttagaaccgcccc 42014049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 42072424 - 42072605
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||       ||||    
T  42072424 tttgcaacacatttatattgtttacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatat-aagaaattca 42072522  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||||||||||||||||| |||  ||||||||| ||||| |||| |||||| ||||||| ||||||||||||    
T  42072523 tagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccc 42072605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 361 - 418
Target Start/End: Original strand, 24065291 - 24065348
Alignment:
Q  361 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagg 418  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  24065291 tacataagaaattgcaagcaaataataaaaaagctaaagaaattgcccaatttatagg 24065348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 471
Target Start/End: Original strand, 19334778 - 19334910
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||| |||||||||||   ||||||||| |  ||||||       |||    
T  19334778 tttgcaacatatttataggggttacataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatat-aaaaaattc 19334876  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttg 471  Q
    ||||| ||||| | ||||||||||||||||||||    
T  19334877 ataagaatttatataagaaattgcaaaaaatttg 19334910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 23556947 - 23557062
Alignment:
Q  15 aacaatccttactgacagagtccaaacatctttagaatcatcgatatctttgatatcatcgaacggacgagcatattctacataaacttccatcctacgg 114  Q
    ||||||||| || ||||  ||||||||||| ||| ||||||||||||||||||||||||| || |||||||||  |||  ||| | ||||||||||| ||    
T  23556947 aacaatcctaacagacaatgtccaaacatccttataatcatcgatatctttgatatcatcaaaaggacgagcaacttcagcatgatcttccatcctatgg 23557046  T
Q  115 attaaaatgtgcttaa 130  Q
      ||||||||| ||||    
T  23557047 cataaaatgtgtttaa 23557062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 34697500 - 34697433
Alignment:
Q  361 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    |||||||||||||||||||||||||||| ||||  |||||||||| |||||||||||| || ||||||    
T  34697500 tacataagaaattgcaagcaaataataaaaaaaattaaagaaatttctcaatttatagagatttatat 34697433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 361 - 472
Target Start/End: Complemental strand, 43282962 - 43282851
Alignment:
Q  361 tacataagaaattgcaagcaaataataaaaa-atgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaatt 459  Q
    |||||||||||| ||||||||||||||||||  | ||| |||||| | ||||||||||||| ||||||       |||| ||| ||||||| ||||||||    
T  43282962 tacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatat-aataaattcagaagaatttacataagaaatt 43282864  T
Q  460 gcaaaaaatttga 472  Q
    | |||||||||||    
T  43282863 gtaaaaaatttga 43282851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 7e-57; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 40846049 - 40845868
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  40846049 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 40845951  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||| |||||||||||||||||| ||||| ||| |||||||||| | |||| ||||||||||||||||||||    
T  40845950 tagggatttacacaaaaaattgcaaaaaatttgacccggaacccgggcgaatgcccgaggtcgccgggccttagaaccgcccc 40845868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 340 - 521
Target Start/End: Original strand, 21853194 - 21853374
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||||    
T  21853194 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggttttatat-aagaaattcat 21853292  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | ||||||||||||||||||||||||||||||  ||||||||| | ||| |||| |||||| ||||||||||||||||||||    
T  21853293 agggatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgcccc 21853374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 340 - 521
Target Start/End: Original strand, 13856096 - 13856276
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||       |||||    
T  13856096 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatat-aagaaattcat 13856194  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | ||||||||||||||||||| ||||||||||  ||||||||| ||| | ||||  ||||| ||||||||||||||||||||    
T  13856195 agggatttacacaagaaattgaaaaaaatttggcccggagcccgggcaagtgccctgggtcgccgggccttagaaccgcccc 13856276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 44995101 - 44994919
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttat-agggaattatatnnnnnnnttc 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||       |||    
T  44995101 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataaggggtttatat-aagaaattc 44995003  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||| ||||||||||||||||||||||||||||||  |||||||||  |||| | || |||||| ||||||||||||||||||||    
T  44995002 atagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtacccggggtcgccgggccttagaaccgcccc 44994919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 8950636 - 8950455
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||       ||||    
T  8950636 tttgcaacatatttatagggcgtacataagaaatttcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatat-aagaaattca 8950538  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || | ||||||||||||||||||||||||||||  || |||||| ||||| |||| |||||| || |||||||||||||||||    
T  8950537 taggaatttacacaagaaattgcaaaaaatttggcccagagcccgggcgagtgcccggggtcgccaggccttagaaccgcccc 8950455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 5391453 - 5391634
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||       ||||    
T  5391453 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatat-aagaaattca 5391551  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||||||||||  ||||| |||   |||||||| ||||| ||||  ||||| ||||||| ||||||||||||    
T  5391552 tagggatttacacaagaaattgtcaaaaaattggcgcggagcccgggcgagtgcccagggtcgccgggccatagaaccgcccc 5391634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 339 - 493
Target Start/End: Original strand, 32352843 - 32352996
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||  ||||||       ||||    
T  32352843 tttgcaacacatttatagggcgtacataagaaattgtaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatat-aagaaattca 32352941  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcc 493  Q
    || ||||||| |||||||||||||||||| |||  ||||||||| ||||| ||||    
T  32352942 tagggatttatacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcc 32352996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 339 - 419
Target Start/End: Complemental strand, 23467626 - 23467546
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23467626 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggg 23467546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 491
Target Start/End: Original strand, 3178699 - 3178850
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||| ||||||||| |  |||||| |||||||||||||||||| ||||||  |||||||||||| |||||||||| || ||||||       ||||    
T  3178699 ttgcaacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaactaaagaaattgcccaatttatagagatttatat-aagaaattca 3178797  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatg 491  Q
    || ||||||||||||||||||| ||||||||||  ||||||||||| ||||||    
T  3178798 tagggatttacacaagaaattgaaaaaaatttgggccggagcccagacgaatg 3178850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 340 - 521
Target Start/End: Original strand, 36539627 - 36539809
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||||||  | ||||| |||||||||| |||||||| ||||||| |||||||||||| |||||||||||| |||||||       ||     
T  36539627 ttgcaacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaattt- 36539725  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||| ||||||||| ||||||||||| |||||||   ||||||||| ||||| |||| | | || || |||||||||||||||||    
T  36539726 atagggatttacataagaaattgcataaaatttaggccggagcccgggcgactgcccgagctcgccaggccttagaaccgcccc 36539809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 520
Target Start/End: Original strand, 1781757 - 1781938
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| ||||||| |||||||||||| |||||||| |||  ||||||       |||    
T  1781757 ttgcaacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatat-aagaaattc 1781855  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    | | ||||||||| ||||||||||||||||||||  || |||||  ||||| |||  ||| || |||||||||  ||||||||    
T  1781856 agagggatttacataagaaattgcaaaaaatttgggccagagcctgggcgactgcacgggctcgccgggccttgaaaccgccc 1781938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 520
Target Start/End: Original strand, 20382514 - 20382693
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    ||||||| |||||||||| |  |||||||||||||||||||||||||| ||||||| |||||||||| | ||||||||||||  ||||||       |||    
T  20382514 ttgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatctaaagaaatttcccaatttataggggtttatat-aagaaattc 20382612  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    ||| ||||||||| ||||||||  ||||||||||  ||||||||| ||| | |||| |||||| || |||| |||||||||||    
T  20382613 atagggatttacataagaaatt-aaaaaaatttgggccggagcccgggcaagtgcccggggtcgcc-ggccatagaaccgccc 20382693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 471
Target Start/End: Complemental strand, 43347468 - 43347337
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||| | ||||||||  |||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||  ||||||       ||||    
T  43347468 ttgcaacataattatagggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatat-aagaaattca 43347370  T
Q  439 taaggatttacacaagaaattgcaaaaaatttg 471  Q
     | | ||||||| ||||||||||||||||||||    
T  43347369 gaggaatttacataagaaattgcaaaaaatttg 43347337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 10839514 - 10839434
Alignment:
Q  339 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatag 417  Q
    |||||||||||| |||||| |  |||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  10839514 tttgcaacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatag 10839434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 33103738 - 33103827
Alignment:
Q  339 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||||||||| |||| |||||   ||||||||||||| ||||||    
T  33103738 tttgcaacacatttataaggatttacataagaaattacaagcaaataataaaaaatttaaataaattatccaatttatagggacttatat 33103827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 19649506 - 19649427
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgctcaatttata 416  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||  ||||||| |||||||||||  |||||||||    
T  19649506 ttgcaacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttata 19649427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 344 - 419
Target Start/End: Original strand, 54546904 - 54546980
Alignment:
Q  344 aacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||||||||||  | ||||||||||||| ||||||||||| |||||| |||||||||||  ||||||||||||    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaatctaaagaaattgtccaatttataggg 54546980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 419
Target Start/End: Complemental strand, 22845484 - 22845414
Alignment:
Q  349 atttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||  || |||| ||||||||||||||||||||||||| |||||||||||   |||||||||||    
T  22845484 atttatagggtttatataaaaaattgcaagcaaataataaaaaatctaaagaaattgtcaaatttataggg 22845414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 435 - 521
Target Start/End: Original strand, 27642751 - 27642837
Alignment:
Q  435 ttcataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    |||| ||||||||||| ||||||||||||||||||||| | ||||||||||| | ||||   | || |||||||||||||| |||||    
T  27642751 ttcaaaaggatttacataagaaattgcaaaaaatttgagcaggagcccaggcaactgcccaagctcgccgggccttagaactgcccc 27642837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 341 - 419
Target Start/End: Original strand, 8926762 - 8926842
Alignment:
Q  341 tgcaacacatttatagggcgta-cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||||||| ||  || |||||||||||||||||||||||| ||||||| || |||||||||  |||||||||||    
T  8926762 tgcaacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggg 8926842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 46685891 - 46685836
Alignment:
Q  363 cataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagg 418  Q
    ||||||||||||||| ||||||||||||||| |||||||||||   ||||||||||    
T  46685891 cataagaaattgcaaacaaataataaaaaatataaagaaattgtcaaatttatagg 46685836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 51336231 - 51336271
Alignment:
Q  365 taagaaattgcaagcaaataataaaaaatgtaaagaaattg 405  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  51336231 taagaaattgcaagtaaataataaaaaatttaaagaaattg 51336271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 47889731 - 47889810
Alignment:
Q  350 tttatagggcgtacataagaaattg-caagcaaataataaaaaa-tgtaaagaaattgctcaatttatagggaattatat 427  Q
    |||||||||  ||||| |||||||| |||| ||||||||||||| | |||||||||||| ||||||||||| | ||||||    
T  47889731 tttatagggtttacattagaaattgtcaagtaaataataaaaaaatttaaagaaattgcccaatttataggaatttatat 47889810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 36826087 - 36826021
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaat-aataaaaaatgtaaagaaatt 404  Q
    |||||||||||||||||||  | |||||||||| ||||||||||| | |||||||| ||||||||||    
T  36826087 ttgcaacacatttataggggtttacataagaaactgcaagcaaatcattaaaaaatttaaagaaatt 36826021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 48206848 - 48206930
Alignment:
Q  339 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||||||||| | |  |||||||||||||||||| ||||||| ||||||| |||| ||||||   |||||||||||    
T  48206848 tttgcaacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggg 48206930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 7e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 42769890 - 42769709
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  42769890 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 42769792  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||||||||  ||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  42769791 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 42769709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 14186570 - 14186389
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||  ||||||       ||||    
T  14186570 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaagtgtaaagaaattgcccaatttataggggtttatat-aagaaattca 14186472  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||||||||| |||||||||||  ||||||| | ||||| ||||||||||| ||||||||||||||||||||    
T  14186471 tagggatttacacaagaaattacaaaaaatttggcccggagctcgggcgagtgcctggggtcgccgggccttagaaccgcccc 14186389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 340 - 521
Target Start/End: Original strand, 29846439 - 29846619
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||       |||||    
T  29846439 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatat-aagaaattcat 29846537  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | ||||||||||||||||||||||||||||||  ||||||||| ||||| |||| ||||||  |||||||||||||||||||    
T  29846538 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgtcgggccttagaaccgcccc 29846619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 14942176 - 14941995
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  14942176 tttgcaacacatttataaggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 14942078  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||||||||  ||||||||| ||||| || | |||||| ||| ||||||||||||||||    
T  14942077 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgtccggggtcgccgagccttagaaccgcccc 14941995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 40277420 - 40277239
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||       || |    
T  40277420 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattt-a 40277322  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||| || |||||||||||||||||  ||||||||| | | | |||| |||||| ||||||||||||||||||||    
T  40277321 tagggatttacataaaaaattgcaaaaaatttggcccggagcccggacaagtgcccggggtcgccgggccttagaaccgcccc 40277239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 19181544 - 19181725
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  19181544 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 19181642  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || | ||||||||||||||||||||||||||||  ||  ||||||||||| || | |||||| ||||||||||||||||||||    
T  19181643 taggaatttacacaagaaattgcaaaaaatttggcccatagcccaggcgagtgtccggggtcgccgggccttagaaccgcccc 19181725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 339 - 420
Target Start/End: Complemental strand, 3597999 - 3597918
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggga 420  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||    
T  3597999 tttgcaatacatttatagggcgtacgtaagaaattgcaagtaaataataaaaaatgtaaagaaattgtccaatttataggga 3597918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 442 - 521
Target Start/End: Complemental strand, 3597920 - 3597841
Alignment:
Q  442 ggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  3597920 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccc 3597841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 339 - 419
Target Start/End: Complemental strand, 1387421 - 1387340
Alignment:
Q  339 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||||||||| || |||  ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||    
T  1387421 tttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaatctaaagaaattacccaatttataggg 1387340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 340 - 467
Target Start/End: Complemental strand, 6318592 - 6318463
Alignment:
Q  340 ttgcaacacatttataggg-cgtacataagaaattgcaagcaaataataaaaaa--tgtaaagaaattgctcaatttatagggaattatatnnnnnnntt 436  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||||||||  | |||||||||||| ||||||||||||| ||||||       ||    
T  6318592 ttgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttatagggatttatat-aagaaatt 6318494  T
Q  437 cataaggatttacacaagaaattgcaaaaaa 467  Q
    |||| ||||||||| ||||||||| ||||||    
T  6318493 catagggatttacataagaaattgaaaaaaa 6318463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 340 - 520
Target Start/End: Original strand, 3956567 - 3956748
Alignment:
Q  340 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    ||||||||||||||||| ||  |||||  ||||||||||||||||||||||||| | |||||||||||  ||||||| ||||  ||||||       |||    
T  3956567 ttgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattttaaagaaattgtccaatttacaggggtttatat-aataaattc 3956665  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    ||| ||||||||| || |||||| |||   ||||  ||||||||| ||||| |||| |||||||||||||| |||||||||||    
T  3956666 atagggatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcccggggtcaccgggccatagaaccgccc 3956748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 43139766 - 43139823
Alignment:
Q  364 ataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  43139766 ataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggg 43139823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 478
Target Start/End: Original strand, 33009666 - 33009807
Alignment:
Q  339 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataata--aaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnt 435  Q
    |||||||||| |||||| |||  ||||||| |||||||||||||||||||  |||||| |||||||||||  ||||||||| ||| ||||||       |    
T  33009666 tttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatctaaagaaattgtccaatttataaggatttatat-aacaaat 33009764  T
Q  436 tcataaggatttacacaagaaattgcaaaaaatttgatccgga 478  Q
    ||||| ||||||| | ||||||||| ||||||||| |||||||    
T  33009765 tcatagggatttatataagaaattgtaaaaaatttaatccgga 33009807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 427
Target Start/End: Complemental strand, 14539838 - 14539748
Alignment:
Q  339 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    ||||||||||||||||||| |  || ||||||||||||||| ||||||||| ||||| ||||||||||||  |||||||||| | ||||||    
T  14539838 tttgcaacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatat 14539748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 40780050 - 40780131
Alignment:
Q  340 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||| |||||||| ||  ||||||||||||||||||||||||| |||||||| |||| ||||||   |||||||||||    
T  40780050 ttgcaacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttataggg 40780131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 41674841 - 41674761
Alignment:
Q  339 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat--aaaaaatgtaaagaaattgctcaatttata 416  Q
    ||||||||||||||||||||  | | ||||||||||||||||||||| |  ||||||| |||||||||||  |||||||||    
T  41674841 tttgcaacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttata 41674761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 28321836 - 28321758
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttata 416  Q
    |||||||||||||||||||  | | ||||||||||| ||||||||||| |||||||  || |||||||| |||||||||    
T  28321836 ttgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaattcaatgaaattgcccaatttata 28321758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 427
Target Start/End: Complemental strand, 23685503 - 23685414
Alignment:
Q  340 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||| |||| || |||| ||||||   |||||||| ||| ||||||    
T  23685503 ttgcaacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatat 23685414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 32486239 - 32486320
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataa-taaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||||||||||| | |  || |||||||||||||||||||||| |||||||| | || ||||| | ||||||||||||    
T  32486239 ttgcaacacatttataagtgtttatataagaaattgcaagcaaataattaaaaaatcttaaaaaattacccaatttataggg 32486320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 340 - 521
Target Start/End: Original strand, 34707113 - 34707293
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||||    
T  34707113 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattcat 34707211  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | ||||||||||||||||||||||||||||||  ||||||||| ||||| |||| |||||| ||||| ||||||||||||||    
T  34707212 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggtcttagaaccgcccc 34707293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 44164875 - 44164694
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  44164875 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 44164777  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||   ||||||||||||||||||||||||||||  ||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  44164776 tagaaatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 44164694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 339 - 527
Target Start/End: Original strand, 10576669 - 10576856
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  10576669 tttgcaatacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 10576767  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccccggtca 527  Q
    || ||||||||||||||||||||||||||||||  ||||||||| || || |||| |||||| |||| ||||||||||||||| |||||    
T  10576768 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggtgagtgcccggggtcgccggaccttagaaccgcccctggtca 10576856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 351 - 521
Target Start/End: Original strand, 34259526 - 34259695
Alignment:
Q  351 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttaca 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||||| |||||||||    
T  34259526 ttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattcatagggatttaca 34259624  T
Q  451 caagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||||||||||||||||| |||  ||||||||| ||||| |||| || ||| ||||||||||||||||||||    
T  34259625 caagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggagtcgccgggccttagaaccgcccc 34259695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 29238275 - 29238094
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||   |||||| |||||  ||||||       ||||    
T  29238275 tttgcaacacatttatagggcctacataagaaattgtaagcaaataataaaaaatgtaaagaaattttccaatttttaggggtttatat-aagaaattca 29238177  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||||||||||||||||| |||  ||||||||| ||||| |||| |||||  ||||||||||||||||||||    
T  29238176 tagggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgcccc 29238094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 339 - 482
Target Start/End: Complemental strand, 24320571 - 24320429
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||     
T  24320571 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattcg 24320473  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagccc 482  Q
    || | ||||||||||||||||||||||||||||  |||||||||    
T  24320472 taggaatttacacaagaaattgcaaaaaatttggcccggagccc 24320429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 29556071 - 29555890
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||       ||||    
T  29556071 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatat-aagaaattca 29555973  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || | |||||||||||||||||  ||||| |||  |||||| || ||||| ||||  ||||| | ||||| ||||||||||||    
T  29555972 taggaatttacacaagaaattgtcaaaaaattggcccggaggccgggcgagtgcccagggtcgctgggccatagaaccgcccc 29555890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 339 - 471
Target Start/End: Complemental strand, 32876662 - 32876531
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||       ||||    
T  32876662 tttgcaacacatttatagagcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatat-aagaaattca 32876564  T
Q  439 taaggatttacacaagaaattgcaaaaaatttg 471  Q
    || |||| |||||||||||||||||||||||||    
T  32876563 tagggatctacacaagaaattgcaaaaaatttg 32876531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 358 - 521
Target Start/End: Complemental strand, 29981226 - 29981064
Alignment:
Q  358 gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaa 457  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    ||||||       |||||| ||||||||||||||||    
T  29981226 gcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatat-aagaaattcatagggatttacacaagaaa 29981128  T
Q  458 ttgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    |||||||| | |||  ||||||||| ||||| |||| | |||| ||||| ||||||||||||||    
T  29981127 ttgcaaaagaattggcccggagcccgggcgagtgcccgaggtcgccgggtcttagaaccgcccc 29981064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 340 - 482
Target Start/End: Complemental strand, 33057789 - 33057647
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||       ||||    
T  33057789 ttgcaacacatttataggatttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatat-aagaaattca 33057691  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagccc 482  Q
    || ||||||||| ||||||||| |||||| |||  |||||||||    
T  33057690 tagggatttacataagaaattgaaaaaaaattgggccggagccc 33057647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 340 - 520
Target Start/End: Complemental strand, 19334693 - 19334512
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||  ||||| |||||||||||  ||||||||||||  ||||||       |||    
T  19334693 ttgcaacaaatttatagggtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgtccaatttataggggtttatat-aagaaattc 19334595  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    ||| | ||||||| |||||||||||||||| |||  ||| | ||  || || || | |||||| ||||||| |||||||||||    
T  19334594 ataggtatttacataagaaattgcaaaaaaattgggccgaaacctgggggagtgaccggggtcgccgggccatagaaccgccc 19334512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 10334173 - 10334251
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaa-atgtaaagaaattgctcaatttata 416  Q
    |||||||||||||||||||  | ||||||||||||||||||||||| |||||| || |||||||||||| |||||||||    
T  10334173 ttgcaacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttata 10334251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 414
Target Start/End: Complemental strand, 17303248 - 17303171
Alignment:
Q  340 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataataa--aaaatgtaaagaaattgctcaattta 414  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||  ||||| |||||||||||| |||||||    
T  17303248 ttgcaacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaattta 17303171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 416
Target Start/End: Complemental strand, 26284510 - 26284433
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttata 416  Q
    |||||||||||||||||||  | ||| ||||||||||||| |||||||||||||| |||||||||||  |||||||||    
T  26284510 ttgcaacacatttataggggtttacaaaagaaattgcaagaaaataataaaaaatctaaagaaattgtccaatttata 26284433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 340 - 519
Target Start/End: Original strand, 38397595 - 38397773
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||||    
T  38397595 ttgcaacacatttataggacgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattcat 38397693  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcc 519  Q
    | ||||||||||||||||||||||||||||||  ||||||||| ||||| |||| |||||| ||||||||||||||||||    
T  38397694 agggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 38397773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 6257542 - 6257361
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  || |||       ||||    
T  6257542 tttgcaacacatttatagggcgtatataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtat-aagaaattca 6257444  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||||||||  ||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  6257443 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 6257361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 37169165 - 37168984
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  37169165 tttgccacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 37169067  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||| |||||||||||||||||  ||||||||| ||| | |||| |||||| ||||||||||||||||||||    
T  37169066 tagggatttacacaaaaaattgcaaaaaatttggcccggagcccgggcaagtgcccggggtcgccgggccttagaaccgcccc 37168984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 23218481 - 23218662
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  23218481 tttgcaacacatttatagggagtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 23218579  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||| ||||  ||||| ||| ||||| |||| ||| || ||||||||||||||||||||    
T  23218580 tagggatttacacaagaaattgcaaaaactttggcccggaacccgggcgagtgcccgggatcgccgggccttagaaccgcccc 23218662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 39862619 - 39862438
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||  ||||||       ||||    
T  39862619 tttgcaacacatttttagggcgtatataagaaattgcaagcaaataataaaaaatctaaagaaattgcccaatttataggggtttatat-aagaaattca 39862521  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || | |||||||||||||||||||||||| |||  ||||||| | ||||| |||| |||||| ||||||||||||||||||||    
T  39862520 taggaatttacacaagaaattgcaaaaaaattggcccggagctcgggcgagtgcccggggtcgccgggccttagaaccgcccc 39862438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 340 - 521
Target Start/End: Complemental strand, 16618701 - 16618521
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||||||||   ||||||       |||||    
T  16618701 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaaaaaattgtccaatttataggagtttatat-aagaaattcat 16618603  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | ||||||||||||||||||| ||||||||||  ||||||||| | ||| |||| |||||| ||||||||||||||||||||    
T  16618602 agggatttacacaagaaattgtaaaaaatttggcccggagcccggacgagtgcccggggtcgccgggccttagaaccgcccc 16618521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 343 - 521
Target Start/End: Original strand, 15631613 - 15631791
Alignment:
Q  343 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttata-gggaattatatnnnnnnnttcataa 441  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||  ||||||       ||||||     
T  15631613 caacgcatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggggtttatat-aagaaattcatag 15631711  T
Q  442 ggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||||||| ||||||||||| ||||||||||  | ||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  15631712 ggatttatacaagaaattgtaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 15631791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 340 - 529
Target Start/End: Complemental strand, 8457096 - 8456906
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||| ||||||||||  | ||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||  ||||||       |||    
T  8457096 ttgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatataagaaa-ttc 8456998  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccccggtcaaa 529  Q
    ||| ||||||||| ||||||||| ||||||||||  ||||||||| ||||| ||| ||||||| ||||||| |||||||||||  |||||||    
T  8456997 atagggatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatggggtcgccgggccatagaaccgcccatggtcaaa 8456906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 340 - 520
Target Start/End: Original strand, 10081140 - 10081323
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||||| |  |||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||||||||  ||||||       |||    
T  10081140 ttgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatctaaagaaattgcccaatttataggggtttatat-aagaaattc 10081238  T
Q  438 ataaggatttacacaagaaattg--caaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    ||| ||||||||| |||||||||   |||||| |||  || |||||| ||||| |||||||| || ||||||| |||||||||||    
T  10081239 atagggatttacataagaaattgaaaaaaaaaattgggccagagcccgggcgagtgcctgggatcgccgggccatagaaccgccc 10081323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 343 - 427
Target Start/End: Complemental strand, 614522 - 614436
Alignment:
Q  343 caacacatttatagg-gcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||| ||||||    
T  614522 caacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatat 614436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 340 - 516
Target Start/End: Complemental strand, 25560460 - 25560284
Alignment:
Q  340 ttgcaacacatttata-gggcgtacataagaaattgcaagcaaataataaaa-aatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||||| ||| |||||||||||  ||||||||||    ||||||       ||     
T  25560460 ttgcaacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaattt- 25560362  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaacc 516  Q
    ||||||||||||| ||||||||| |||||| |||| ||||||||| | ||| || | |||||  ||||||| |||||||    
T  25560361 ataaggatttacataagaaattg-aaaaaaattgagccggagcccggacgagtggccggggttgccgggccatagaacc 25560284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 511
Target Start/End: Complemental strand, 36769207 - 36769035
Alignment:
Q  339 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    ||||||||||||||||||||  | ||||| ||||||||||||||||||| |||||| ||||||||||||  |||| |||| |  ||||||       |||    
T  36769207 tttgcaacacatttataggggtttacatatgaaattgcaagcaaataatcaaaaatctaaagaaattgcctaattcatagaggtttatat-aagaaattc 36769109  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggcctta 511  Q
    | | | ||||||| ||||||||||||||||||||  |||||| || | | | |||||||| ||||||| |||||    
T  36769108 agaggaatttacataagaaattgcaaaaaatttgggccggagtccggacaagtgcctgggctcaccggacctta 36769035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 361 - 419
Target Start/End: Original strand, 6174762 - 6174820
Alignment:
Q  361 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||| |||||||||||||||||||||||||| |||||||||||  ||||||||||||    
T  6174762 tacataggaaattgcaagcaaataataaaaaatataaagaaattgtccaatttataggg 6174820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 427
Target Start/End: Original strand, 11856290 - 11856379
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    |||||||| ||||||||| |  |||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||| || ||||||    
T  11856290 ttgcaacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatat 11856379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 9738094 - 9738027
Alignment:
Q  361 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||  ||||||||||||| ||||||    
T  9738094 tacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatat 9738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 27916133 - 27916215
Alignment:
Q  339 tttgcaacacatttatagggcgt--acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagg 418  Q
    |||||||||||||||||||  ||  | |||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||    
T  27916133 tttgcaacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttatagg 27916215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 361 - 471
Target Start/End: Complemental strand, 3341230 - 3341121
Alignment:
Q  361 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaattg 460  Q
    ||||||| |||||| ||||||||||| |||||  |||||||||| | |||||||||||| |||||||       ||||  || ||||||| |||||||||    
T  3341230 tacataaaaaattgaaagcaaataatcaaaaagctaaagaaatttcccaatttataggggattatataaaaaaattca-gagaatttacataagaaattg 3341132  T
Q  461 caaaaaatttg 471  Q
    |||||||||||    
T  3341131 caaaaaatttg 3341121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 42119617 - 42119696
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatag 417  Q
    |||||||||||||||||||  | |||||||||||| ||| |||||||| ||||||| |||||||||||  ||||||||||    
T  42119617 ttgcaacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatag 42119696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 33271377 - 33271324
Alignment:
Q  364 ataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatag 417  Q
    |||||||||| ||| ||||||||||||||| |||||||||||  ||||||||||    
T  33271377 ataagaaattacaaacaaataataaaaaatataaagaaattgtccaatttatag 33271324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 29491521 - 29491465
Alignment:
Q  363 cataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||  ||||||||||||    
T  29491521 cataagaaattgcaagcaaataatcaaaaaatttaaag-aattgtccaatttataggg 29491465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 406
Target Start/End: Complemental strand, 33188451 - 33188407
Alignment:
Q  362 acataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 406  Q
    |||||||||||| ||||||||||||||||||| ||  ||||||||    
T  33188451 acataagaaattacaagcaaataataaaaaatttattgaaattgc 33188407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 4e-55; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 7742911 - 7742730
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  7742911 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 7742813  T
Q  439 taaggatttacacaagaaattgc-aaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||||||||||||||||||||||| |||||||||| | |||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  7742812 taaggatttacacaagaaattgcaaaaaaatttgct-cggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 7742730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 48392538 - 48392357
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||       ||||    
T  48392538 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaatgaaattgcccaatttatagggatttatat-aagaaattca 48392440  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||||||||||||||||| |||   |||||||| ||||| |||| | |||| ||||||||||||||||||||    
T  48392439 tagggatttacacaagaaattgcaaaaaaattggctcggagcccgggcgagtgcccgaggtcgccgggccttagaaccgcccc 48392357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 42517430 - 42517245
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg----aattatatnnnnnnn 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||||           
T  42517430 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttgtttatat-aagaaa 42517332  T
Q  435 ttcataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  42517331 ttcatagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 42517245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 49902464 - 49902645
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||  ||||||       ||||    
T  49902464 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgccctatttataggggtttatat-aagaaattca 49902562  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||||||||  |||||||||  |||| |||| || ||| |||| |||||||||||||||    
T  49902563 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgagcgagtgcccggagtcgccggaccttagaaccgcccc 49902645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 343 - 517
Target Start/End: Original strand, 5974988 - 5975161
Alignment:
Q  343 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataag 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||||       ||| || |    
T  5974988 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggggtttatat-aagaaattcttagg 5975086  T
Q  443 gatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccg 517  Q
    |||||||||||||||||| ||||||||||  ||||||||| ||||| |||| |||||| ||||||||||||||||    
T  5975087 gatttacacaagaaattgaaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccg 5975161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 10156148 - 10155967
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||    ||||||       ||||    
T  10156148 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatataaagaaattgtccaatttatagaagtttatat-aagaaattca 10156050  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || | |||||||||||||||||||||||| |||  ||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  10156049 taggaatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 10155967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 47022698 - 47022879
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||  ||||||||||   ||||||       ||||    
T  47022698 tttgcaacatatttatagggcgtacataagaaattacaagtaaataataaaaaatataaagaaattgcctaatttataggagtttatat-aagaaattca 47022796  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||  |||||||||||||||||||||||||||||  ||||||||| ||||| |||| |||||| ||||||||||||||||||||    
T  47022797 tagagatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcccc 47022879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 3346782 - 3346963
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||       ||||    
T  3346782 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttataggggtttatat-aagaaattca 3346880  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||| |||||||||||||||||  ||| ||| | ||||| |||| ||| || | || |||||||| ||||||    
T  3346881 tagggatttacacaacaaattgcaaaaaatttggcccgaagctcgggcgagtgcccgggatcgctggaccttagaatcgcccc 3346963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 29149680 - 29149509
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||||       ||||    
T  29149680 tttgcaacacatgtatagggcgtacataagaaattgcaagcaaataataaaaaacgtaaagaaattgcccaatttataggggtttatat-aagaaattca 29149582  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||          ||||||||||| |||||||||| ||||| ||||||||||| || ||||||| |||||||||    
T  29149581 tagggatttaca----------caaaaaatttggtccggagcccgggcgagtgcctggggtcgccaggccttaaaaccgcccc 29149509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 340 - 521
Target Start/End: Original strand, 23908282 - 23908452
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||| ||||||       |||||    
T  23908282 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaacataaagaaattgtccaatttatagggatttatat-aagaaattcat 23908380  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | | |||||||          |||||||||||  ||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  23908381 aggaatttaca----------caaaaaatttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgcccc 23908452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 343 - 520
Target Start/End: Original strand, 38859849 - 38860027
Alignment:
Q  343 caacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcata 440  Q
    ||||||||||||||||  | ||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||  ||||||       ||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatat-aagaaattcata 38859947  T
Q  441 aggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
     | ||||||| ||||||||| ||||||||||  ||||||||| ||||| |||| |||||| ||||||| |||||||||||    
T  38859948 ggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 38860027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 482
Target Start/End: Complemental strand, 10907781 - 10907638
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||||| |  |||||||||||||||||||||||||| ||||||| |||||||||||    ||||||||||  ||||||       |||    
T  10907781 ttgcaacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatat-aagaaattc 10907683  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagccc 482  Q
    | | | ||||||| ||||||||||||||||||||  |||||||||    
T  10907682 agaggaatttacataagaaattgcaaaaaatttgggccggagccc 10907638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 418
Target Start/End: Original strand, 26835332 - 26835413
Alignment:
Q  339 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagg 418  Q
    ||||||||||||||||| |||  ||||| |||||||||||||||||||| ||||||| |||| |||||| ||||||||||||    
T  26835332 tttgcaacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttatagg 26835413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 30745361 - 30745427
Alignment:
Q  361 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattata 426  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||  ||||||||||||| |||||    
T  30745361 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttata 30745427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 30766812 - 30766878
Alignment:
Q  361 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattata 426  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||  ||||||||||||| |||||    
T  30766812 tacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttata 30766878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 5558334 - 5558385
Alignment:
Q  368 gaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||||||||||| |||||| |||||||||||  ||||||||||||    
T  5558334 gaaattgcaagcaaataatcaaaaatctaaagaaattgtccaatttataggg 5558385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 361 - 427
Target Start/End: Complemental strand, 30252856 - 30252789
Alignment:
Q  361 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatat 427  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||   |||||||||||| ||||||    
T  30252856 tacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatat 30252789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 8430551 - 8430508
Alignment:
Q  362 acataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 404  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  8430551 acataagaaattgcaagcaaataataaaaaaatttaaagaaatt 8430508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 27587586 - 27587500
Alignment:
Q  25 actgacagagtccaaacatctttagaatcatcgatatctttgatatcatcgaacggacgagcatattctacataaacttccatccta 111  Q
    |||| ||||||||| |  ||||| |||||||| ||||||||||||||||| || |||||||||  ||| | || | |||||||||||    
T  27587586 actggcagagtccagatgtcttttgaatcatcaatatctttgatatcatcaaaaggacgagcaacttcaatatgatcttccatccta 27587500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 419
Target Start/End: Complemental strand, 44107522 - 44107440
Alignment:
Q  339 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||||||||| ||  | ||||||||||||||||| ||||||| ||||||| | ||||||||  | |||||||||||    
T  44107522 tttgcaacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggg 44107440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 1535767 - 1535948
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  1535767 tttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 1535865  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||||||||  ||||||||| ||||| ||||  ||||| ||||||||||||||||||||    
T  1535866 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgccccgggtcgccgggccttagaaccgcccc 1535948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 37801396 - 37801215
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||       ||||    
T  37801396 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaatttgcccaatttatagggatttatat-aaaaaattca 37801298  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    ||   |||||||||||||||||||||||||||   ||||||||| | |||||||||| | ||  |||||||||||||||||||    
T  37801297 tagaaatttacacaagaaattgcaaaaaatttagcccggagcccggacgaatgcctgagatcgtcgggccttagaaccgcccc 37801215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 339 - 517
Target Start/End: Original strand, 49284353 - 49284530
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  49284353 tttgcaacacatttatagggcgtacataagaaattgcaaacaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 49284451  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccg 517  Q
    || ||||||||||||||||||||||||||||||  ||||||||| | ||| |||| ||| || | ||||||||||||||    
T  49284452 tagggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgcccgggttcgctgggccttagaaccg 49284530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 25954746 - 25954888
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||       ||||    
T  25954746 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatat-aagaaattca 25954844  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagccc 482  Q
    || | ||||||||||||||||||||||||||||  |||||||||    
T  25954845 taggaatttacacaagaaattgcaaaaaatttggcccggagccc 25954888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 343 - 482
Target Start/End: Original strand, 34240993 - 34241131
Alignment:
Q  343 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataag 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||||| |    
T  34240993 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattcatagg 34241091  T
Q  443 gatttacacaagaaattgcaaaaaatttgatccggagccc 482  Q
    ||| |||||||||||||||||||||||||  |||||||||    
T  34241092 gatctacacaagaaattgcaaaaaatttggcccggagccc 34241131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 52632514 - 52632685
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||       ||||    
T  52632514 tttgcaacacatttatagggcgtacataagaaattgcaagcaaatattaaaaaatgtaaagaaattgcccaatttatagggatttatat-aagaaattca 52632612  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||||          |||||||  ||||||||||||| | |||| |||||||||||||||||||||| ||||    
T  52632613 tagggatttacacaag----------aaatttggcccggagcccaggcaagtgcccggggtcaccgggccttagaaccacccc 52632685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 35018932 - 35019112
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||  ||||||       ||||    
T  35018932 tttgcaacacatttataaggtgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattacctaatttataagggtttatat-aagaaattca 35019030  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    | |||||||||||||||||||| ||||||||||  || |||||| ||||| ||||  ||||| ||||||||||||||||||||    
T  35019031 t-aggatttacacaagaaattgtaaaaaatttggcccagagcccgggcgagtgcccagggtcgccgggccttagaaccgcccc 35019112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 36012317 - 36012137
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       ||||    
T  36012317 tttgcaacacatttatatgacatacataaaaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattca 36012219  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||||||||||| |||||||||||||||||  ||| ||||| | ||| ||||  ||||| ||||||||||||||||||||    
T  36012218 tagggatttacacaaaaaattgcaaaaaatttggcccgaagccc-gacgagtgcccagggtcgccgggccttagaaccgcccc 36012137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 366 - 521
Target Start/End: Complemental strand, 16338318 - 16338164
Alignment:
Q  366 aagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaattgcaaaa 465  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||       |||||| | |||||||||| |||||||||||    
T  16338318 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatat-aaaaaattcataggaatttacacaaaaaattgcaaaa 16338220  T
Q  466 aatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||  |||||  || |||||||||| |||||| ||||||||||||||||||||    
T  16338219 aaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccc 16338164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 340 - 520
Target Start/End: Complemental strand, 17888683 - 17888502
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataa-aaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||  ||||||       |||    
T  17888683 ttgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgcccaatttatagggggttatat-aagaaattc 17888585  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    ||| | ||||||| ||||||||| ||||||||||  ||||||||| ||||| |||| |||||| || |||| |||||||||||    
T  17888584 ataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgcctggccatagaaccgccc 17888502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 406
Target Start/End: Complemental strand, 16338375 - 16338309
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16338375 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 16338309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 340 - 520
Target Start/End: Original strand, 31377385 - 31377565
Alignment:
Q  340 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaata-ataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||  |||||||| |||||||||||| |||||||||| |  ||||||       |||    
T  31377385 ttgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatctaaagaaattgcccaatttatagagggttatat-aagaaattc 31377483  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    ||| ||||||||| ||||||||| ||||||||||  ||||||||| ||||| |||| |||||| ||||||| |||||||||||    
T  31377484 atagggatttacataagaaattg-aaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 31377565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 343 - 419
Target Start/End: Complemental strand, 46583669 - 46583593
Alignment:
Q  343 caacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  46583669 caacacatttatatggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcctaatttataggg 46583593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 435 - 517
Target Start/End: Complemental strand, 36851424 - 36851342
Alignment:
Q  435 ttcataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccg 517  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||||||| |||| |||||| | |||||||| |||||    
T  36851424 ttcatagggatttacacaagaaattgcaaaaaatttggcccggagcccaggcgagtgcccggggtcgctgggccttaaaaccg 36851342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 419
Target Start/End: Complemental strand, 322682 - 322601
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggg 419  Q
    |||||||||||||| ||| |  |||||||||||||||||||||||||| ||||||| |||||||||||  ||||||||||||    
T  322682 ttgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatttaaagaaattgtccaatttataggg 322601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 520
Target Start/End: Original strand, 11054448 - 11054631
Alignment:
Q  340 ttgcaacacatttatag-ggcgtacataagaaattgcaagcaaataat---aaaaaatg-taaagaaattgctcaatttatagggaattatatnnnnnnn 434  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||||    |||||||  |||||| ||||| |||||||||| |  ||||||           
T  11054448 ttgcaacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaa- 11054546  T
Q  435 ttcataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    |||||| ||||||||| |||||||||||||||||| || ||||||||| || || |||  |||||| ||||||| |||||||||||    
T  11054547 ttcatagggatttacataagaaattgcaaaaaattgga-ccggagcccgggtgagtgctcggggtcgccgggccatagaaccgccc 11054631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 416
Target Start/End: Original strand, 54090176 - 54090253
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaa-ttgcaagcaaataataaaaaatgtaaagaaattgctcaatttata 416  Q
    ||||||||||| |||||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||| |||||||||    
T  54090176 ttgcaacacatctatagggtttacataaaaaaattgcaagcaaataataaaaaatctaaaaaaattgcccaatttata 54090253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 340 - 417
Target Start/End: Complemental strand, 35322837 - 35322758
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatag 417  Q
    ||||||||| |||||||||  | | ||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||    
T  35322837 ttgcaacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatag 35322758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 520
Target Start/End: Original strand, 20818584 - 20818743
Alignment:
Q  361 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaatt 459  Q
    ||||||||||||||||| |||||||| ||||||| |||| ||||||  |||||||||||   ||||||       |||||| ||||||||| ||||||||    
T  20818584 tacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatat-aagaaattcatagggatttacaaaagaaatt 20818682  T
Q  460 gcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    ||||||||||||   | |||||| ||||| |||| || ||| ||||  | |||||||||||    
T  20818683 gcaaaaaatttgggtcagagcccgggcgagtgcccggagtcgccggatcatagaaccgccc 20818743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 480
Target Start/End: Original strand, 46473988 - 46474130
Alignment:
Q  339 tttgcaacacatttatagggcgt-acataagaaattgcaagcaaataata-aaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnntt 436  Q
    ||||||||||||||||| ||  | |||||||||||| ||||||||||||| |||||| |||||||||||  ||||||||| ||  ||||||       ||    
T  46473988 tttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatctaaagaaattgtacaatttatatgggtttatat-aaaaaatt 46474086  T
Q  437 cataaggatttacacaagaaattgcaaaaaatttgatccggagc 480  Q
    || | | ||||||| ||||||||||||||||||||  |||||||    
T  46474087 cacaggaatttacataagaaattgcaaaaaatttgggccggagc 46474130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 9742661 - 9742585
Alignment:
Q  345 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||||| |  |||||||||||||||| | ||||||| ||||||| |||||||||||| ||||||||||||    
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggg 9742585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 50328790 - 50328870
Alignment:
Q  339 tttgcaacacatttata-gggcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatag 417  Q
    ||||||||||||||||| |||  ||||||| ||||||||||  |||||| ||||||| |||||||||||  ||||||||||    
T  50328790 tttgcaacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatag 50328870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 419
Target Start/End: Complemental strand, 12792365 - 12792283
Alignment:
Q  339 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataata-aaaaatgtaaagaaattgctcaatttataggg 419  Q
    ||||||||||||||||||  |  || |||||||||| ||||||||||||  |||||| ||||| |||||| ||||||||||||    
T  12792365 tttgcaacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggg 12792283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 19124849 - 19124795
Alignment:
Q  361 tacataagaaattgcaagcaaataataa-aaaatgtaaagaaattgctcaattta 414  Q
    |||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||||||    
T  19124849 tacataagaaattgtaagtaaataataaaaaaatttaaagaaattgatcaattta 19124795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 339 - 521
Target Start/End: Complemental strand, 24694783 - 24694602
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||       ||||    
T  24694783 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggagtttatat-aagaaattca 24694685  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||||||||  ||||||||| ||||| ||||  ||||  ||||||||||||||||||||    
T  24694684 tagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccagggttgccgggccttagaaccgcccc 24694602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 339 - 521
Target Start/End: Original strand, 13627536 - 13627717
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    ||||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||||       ||||    
T  13627536 tttgcaacatatttataggacgtacataagaaagtacaagcaaataataaaaaatgtaaagaaattgctcaatttataggggtttatat-aagaaattca 13627634  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || ||||||||||||||||||||||||||||||  ||||||||| | ||| ||| ||||||| ||||||||||||||||||||    
T  13627635 tagggatttacacaagaaattgcaaaaaatttggcccggagcccggacgagtgcttggggtcgccgggccttagaaccgcccc 13627717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 340 - 521
Target Start/End: Complemental strand, 9231985 - 9231805
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcat 439  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||       |||||    
T  9231985 ttgcaacacatttatagggcatacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttataggggtttatat-aagaaattcat 9231887  T
Q  440 aaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    |  ||||||||||||||||||||||||| |||  ||||||||| ||||| |||| |||||| ||| ||||||||||||||||    
T  9231886 agagatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgagccttagaaccgcccc 9231805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 339 - 519
Target Start/End: Complemental strand, 14309930 - 14309752
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||       ||||    
T  14309930 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgcccaatttatagggatttatat-aagaaattca 14309832  T
Q  439 taaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcc 519  Q
    || ||||||||||||||||||||||||||||||  || ||  || ||||| || |||||||| |||||||||| |||||||    
T  14309831 tagggatttacacaagaaattgcaaaaaatttg-gcccgaaaccgggcgagtgtctggggtcgccgggccttataaccgcc 14309752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 369 - 481
Target Start/End: Complemental strand, 1728035 - 1727924
Alignment:
Q  369 aaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaattgcaaaaaat 468  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||       |||||| |||||||||||||||||||||||||||    
T  1728035 aaattgcaaggaaataataaaaaatgtaaagaaattgctcaatttataggggtttatat-aagaaattcatagggatttacacaagaaattgcaaaaaat 1727937  T
Q  469 ttgatccggagcc 481  Q
    |||  ||||||||    
T  1727936 ttggcccggagcc 1727924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 339 - 392
Target Start/End: Original strand, 11084606 - 11084659
Alignment:
Q  339 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11084606 tttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaa 11084659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 361 - 426
Target Start/End: Original strand, 11212689 - 11212754
Alignment:
Q  361 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattata 426  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||| ||||||||||||| |||||    
T  11212689 tacataagaaattacaagcaaataattaaaaatctaaagaaattgcccaatttatagggatttata 11212754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 435 - 521
Target Start/End: Original strand, 11084681 - 11084766
Alignment:
Q  435 ttcataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    |||||| | |||||||||||||||||||||||| |||   |||| ||| ||||| |||| |||||||||||||||||||||||||||    
T  11084681 ttcataggaatttacacaagaaattgcaaaaaaattggctcggaacccgggcga-tgcccggggtcaccgggccttagaaccgcccc 11084766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 339 - 416
Target Start/End: Original strand, 27863694 - 27863772
Alignment:
Q  339 tttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttata 416  Q
    ||||||||||||||||||  |  ||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||    
T  27863694 tttgcaacacatttatagatgtttacataagaaattgcaaacaaataataaaaaatctaaagaaattgtccaatttata 27863772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 11279536 - 11279601
Alignment:
Q  340 ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaatgtaaagaaatt 404  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||||||||| ||||||||||    
T  11279536 ttgcaacacatttatagagatttacataagaaattgcaagcaaataataaaaaatctaaagaaatt 11279601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 340 - 520
Target Start/End: Complemental strand, 28750783 - 28750602
Alignment:
Q  340 ttgcaacacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttc 437  Q
    |||||||||||||||| | |  ||||||||||||| |||||||||||| ||||||  |||||||||||| ||||||||||||  ||||||       |||    
T  28750783 ttgcaacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatat-aagaaattc 28750685  T
Q  438 ataaggatttacacaagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    | ||| ||||||| |||||||||||||||| |||  || ||||||  || | ||||  |  || |||||||||||||||||||    
T  28750684 agaagaatttacataagaaattgcaaaaaaattggcccagagcccgagcaattgcccagactcgccgggccttagaaccgccc 28750602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 416
Target Start/End: Original strand, 34103703 - 34103758
Alignment:
Q  361 tacataagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttata 416  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| | |||||||||    
T  34103703 tacataagaaattgcaaacaaataataaaaaatctaaagaaatttcccaatttata 34103758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 416
Target Start/End: Complemental strand, 13103246 - 13103173
Alignment:
Q  345 acacatttatagg-gcgtacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttata 416  Q
    ||||||||||||| |  ||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||    
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttata 13103173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 24500830 - 24500767
Alignment:
Q  343 caacacatttata-gggcgtacataagaaattgcaagcaaataataa-aaaatgtaaagaaatt 404  Q
    ||||||||||||| |||  |||||| ||||||||||||||||||||| ||||| ||||||||||    
T  24500830 caacacatttataagggtttacatatgaaattgcaagcaaataataaaaaaatctaaagaaatt 24500767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 452 - 520
Target Start/End: Complemental strand, 34383431 - 34383363
Alignment:
Q  452 aagaaattgcaaaaaatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgccc 520  Q
    |||||||||| ||||||||   ||||||||| ||||||| || |||||| || |||| |||||||||||    
T  34383431 aagaaattgcgaaaaatttaggccggagcccgggcgaatacccggggtcgccaggccatagaaccgccc 34383363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 366 - 521
Target Start/End: Original strand, 54542 - 54696
Alignment:
Q  366 aagaaattgcaagcaaataataaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaattgcaaaa 465  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||       |||||| | |||||||||| |||||||||||    
T  54542 aagaaattgcaagcaaataataaaaaatgtaaagaaattgtccaatttatagggatttatat-aaaaaattcataggaatttacacaaaaaattgcaaaa 54640  T
Q  466 aatttgatccggagcccaggcgaatgcctggggtcaccgggccttagaaccgcccc 521  Q
    || |||  |||||  || |||||||||| |||||| ||||||||||||||||||||    
T  54641 aaattggcccggaatccgggcgaatgcccggggtcgccgggccttagaaccgcccc 54696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 54485 - 54551
Alignment:
Q  340 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54485 ttgcaacacatttatagggcgtacataagaaattgcaagcaaataataaaaaatgtaaagaaattgc 54551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 467
Target Start/End: Complemental strand, 34563 - 34457
Alignment:
Q  361 tacataagaaattgcaagcaaataat-aaaaaatgtaaagaaattgctcaatttatagggaattatatnnnnnnnttcataaggatttacacaagaaatt 459  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| ||  |||||||||| || ||||||       |||| | ||||||||| ||||||||    
T  34563 tacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatat-aaagaattcagagggatttacataagaaatt 34465  T
Q  460 gcaaaaaa 467  Q
    ||||||||    
T  34464 gcaaaaaa 34457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University