View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_high_11 (Length: 368)
Name: NF2389_high_11
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 3424683 - 3425038
Alignment:
| Q |
1 |
atgtccaagaatatcgacacatgtgattacatttaattatatcannnnnnnncaaatactactagtgttcgtattgtgctagtgttttgtagattactat |
100 |
Q |
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| T |
3424683 |
atgtccaacaagatcgacacatgtgattacatttaattatatcattttttt-caaatactactagtgttcgtattgtgctagtgttttgtagattactat |
3424781 |
T |
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| Q |
101 |
attttagttgttaaattaatataatatactcctttgtttgagtttgaaccaggacctcaaactccttaaccttgactcaaataagtggagctatccaacc |
200 |
Q |
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| T |
3424782 |
--tttagttgttaaattaatataatatactcctttgtttgagtttgaaccaggacctcacactccttaaccttgactcaaataagtggagctatccaacc |
3424879 |
T |
|
| Q |
201 |
ccatagcatgaaatcaaagggtaaacacttattttgtttcctaaatgtgtcttat----gtaattttagtgatcaaattgactagcagaagacacgttcg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||| |
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| T |
3424880 |
ccatagcatgaaatcaaagggtaaacacttattttgtttcctaaatgtgtcttatgttagtaattttagtgatcaaattgactagcggaagacacattca |
3424979 |
T |
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| Q |
297 |
attgacaaactaattaacaaaagacacaaccaaactggcttatgaaagatgtatatatt |
355 |
Q |
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| T |
3424980 |
attgacaaactaattaacaaaagacacaaccaaactggcttatgaaagatgtatatatt |
3425038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 38487776 - 38487836
Alignment:
| Q |
143 |
tttgaaccaggacctcaaactccttaa-ccttgactcaaataagtggagctatccaacccc |
202 |
Q |
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|||||||||||||||| | |||||||| |||| |||||||| ||| |||||| |||||||| |
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| T |
38487776 |
tttgaaccaggacctccatctccttaacccttaactcaaatcagttgagctacccaacccc |
38487836 |
T |
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