View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_high_13 (Length: 354)
Name: NF2389_high_13
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 45176972 - 45176846
Alignment:
| Q |
219 |
gacaggatttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaattttaaattaatgaaaggaacataagttgctgttgaatcc |
318 |
Q |
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| T |
45176972 |
gacaggatttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaattttaaattaatgaaaggaacataagttgctgttgaatcc |
45176873 |
T |
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| Q |
319 |
atgtgaatgaagaaacttttgtctctg |
345 |
Q |
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| T |
45176872 |
atgtgaatgaagaaacttttgtctctg |
45176846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 45177171 - 45177056
Alignment:
| Q |
20 |
cagttctccatccattcattttgatcatattgattgataccaagtgttaattcataggagtaacttctttctggttcaactcttgtgttactttttggaa |
119 |
Q |
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| T |
45177171 |
cagttctccatccattcattttgatcatattgattgataccaagtgttaattcataggagtaacttctttctggttcaactcttgtgttactttttggaa |
45177072 |
T |
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| Q |
120 |
tttccttacctaatgt |
135 |
Q |
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| T |
45177071 |
tttccttacctaatgt |
45177056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 225 - 345
Target Start/End: Complemental strand, 35313665 - 35313545
Alignment:
| Q |
225 |
atttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaattttaaattaatgaaaggaacataagttgctgttgaatccatgtga |
324 |
Q |
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| T |
35313665 |
atttgagagcttacaaacatgttggtagttttgtagggcatgcacctctgtgaattttaaattaatgaacggaacataagttgctgttgaatccatgtga |
35313566 |
T |
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| Q |
325 |
atgaagaaacttttgtctctg |
345 |
Q |
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| T |
35313565 |
atgaagaaacttttgtctctg |
35313545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 27429986 - 27430039
Alignment:
| Q |
283 |
aaattaatgaaaggaacataagttgctgttgaatccatgtgaatgaagaaactt |
336 |
Q |
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| T |
27429986 |
aaattaatgaaaggaacattagttgatgttgaatccatgtgaatgaagaaactt |
27430039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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