View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2389_high_15 (Length: 331)
Name: NF2389_high_15
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 37770539 - 37770805
Alignment:
| Q |
20 |
attaaatcagtggttaatgccagcaagtagatatggacttcttatttgtactattgctgttgggttgcctgtgttcatttgtgttacctgattcacaagg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37770539 |
attaaatcagtggttaatgccagcaagtagatatggacttcttatttgtactattgctgttgggttgcctgtgttcatttgtgttacctgattcacaagg |
37770638 |
T |
|
| Q |
120 |
tacattcttatatttgctcgtcactcgctatgtaagataagatttaattgttaaatatgcaactgcattcacattctttttatttggagggtggataaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37770639 |
tacattcttatatttgctcgtcactcgctatgtaagataagatttaattgttaaatatgcaactgcattcacattctttttattgggagggtggataaaa |
37770738 |
T |
|
| Q |
220 |
acattcgtttatgagcagaaataaacgtgtacgacatctgtaatacattgagagagtttaatgactc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37770739 |
acattcgtttatgagcagaaataaacgtgtacgacatctgtaatacattgagagagtttaatgactc |
37770805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University