View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2389_high_16 (Length: 326)
Name: NF2389_high_16
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 3343320 - 3343017
Alignment:
| Q |
1 |
tttcttgaacttgttctaactgatggattatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3343320 |
tttcttgaacttgttctaactgatggattatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaact |
3343221 |
T |
|
| Q |
101 |
ccaaaaacagatttgactctaatacagaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3343220 |
ccaaaaacagatttgactccaatacagaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagc |
3343121 |
T |
|
| Q |
201 |
attcccaaagaagaaacatattgtagcaaatcttcatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacaccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3343120 |
attcccaaagaagaaacatattgtagcaaatcttaatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacaccc |
3343021 |
T |
|
| Q |
301 |
aaag |
304 |
Q |
| |
|
|||| |
|
|
| T |
3343020 |
aaag |
3343017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 3367805 - 3367505
Alignment:
| Q |
4 |
cttgaacttgttctaactgatggattatgtgatttgcctaagcctagcaaacaacttcatctgtcatgcttgaaagtttttcagatgtttttcaactcca |
103 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
3367805 |
cttgaacttgttctaattgatggattgtgtgatttacctaaacctagcaaacaacttcatctcgcatgcttgaaagtttttgagatgttttacaactcca |
3367706 |
T |
|
| Q |
104 |
aaaacagatttgactctaatacagaattggtggaggatataaacaaagcaatatatcttcctttgaatagaactacgaagtgtctttcatctcaagcatt |
203 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||| |||| |
|
|
| T |
3367705 |
aaaatagatttgattctaatacagatttggttgaagatataaacaaagcaatatatcttcctttgggtagaactacaaagtgtttttcacctcaaacatt |
3367606 |
T |
|
| Q |
204 |
cccaaagaagaaacatattgtagcaaatcttcatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacacccaaa |
303 |
Q |
| |
|
||||||||||||||||| | || ||| | ||| || |||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||| ||| |
|
|
| T |
3367605 |
cccaaagaagaaacatactatatcaataatccataataacttcccattcaaacataatagtaagataggtttcaccagaatgaggttcatgacacctaaa |
3367506 |
T |
|
| Q |
304 |
g |
304 |
Q |
| |
|
| |
|
|
| T |
3367505 |
g |
3367505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University