View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_high_20 (Length: 293)
Name: NF2389_high_20
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 44489720 - 44489458
Alignment:
| Q |
19 |
agttaaatatgacaggagggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489720 |
agttaaatatgacaggagggtaattatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctg |
44489621 |
T |
|
| Q |
119 |
gctggtacattctcccattacatcaaatgaaactgtggtgcacttcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489620 |
gctggtacattctcccattacatcaaatgaaactgtggtgcacctcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatca |
44489521 |
T |
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| Q |
219 |
aaccagtacattacataatttcattnnnnnnnnntataattcatataaactattaattgttcat |
282 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44489520 |
aaccagtacattacataatttcattaaaaaaaaa-ataattcatataaactattaattgttcat |
44489458 |
T |
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