View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_high_27 (Length: 250)
Name: NF2389_high_27
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 46994467 - 46994210
Alignment:
| Q |
1 |
cctgaaatctca-ttatgccattaaacttggatgaaaattacaaacttatccctgatgtcatatctgtgttt------------------atcattgttg |
81 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||||||| || |
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| T |
46994467 |
cctgaaatctcaattatgccattaaactttgatgaaaattacaaacttatccctgatctcatatttgtgtttgtatttttgtgtctgtttatcattgatg |
46994368 |
T |
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| Q |
82 |
tttcttctattcagccatctttactgctttctttttagttgttggattaaatcgatatgtgaaagataaaaagaataaaaagtggaattagattgagata |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46994367 |
tttcttctattcagccatctttactgctttctttttagttgttggattaaatcgatatgtgaaagataaaaagaataaaaagtggaattagattgagata |
46994268 |
T |
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| Q |
182 |
tacaatgttttcttcttcaatacccagctgactgtaatatgacctttttctacccttt |
239 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46994267 |
tacaatgttttcttcttcaatacccagctgactgtaatatgacctttttctacccttt |
46994210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 82 - 239
Target Start/End: Complemental strand, 2039204 - 2039048
Alignment:
| Q |
82 |
tttcttctattcagccatctttactgctttctttttagttgttggattaaatcgatatgtgaaagataaaaagaataaaaagtggaattagattgagata |
181 |
Q |
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|||||||| ||||||||||| | ||||||||||||||| |||| |||||||||| ||| |||||||||| |||||||||||||||| |||||||||| |
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| T |
2039204 |
tttcttct-ttcagccatctctcctgctttctttttagccattggtttaaatcgatgggtgtaagataaaaataataaaaagtggaattcgattgagata |
2039106 |
T |
|
| Q |
182 |
tacaatgttttcttcttcaatacccagctgactgtaatatgacctttttctacccttt |
239 |
Q |
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||| ||||||||||||||| |||| ||||||||||||||||| |||| |||||||||| |
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| T |
2039105 |
tacgatgttttcttcttcattaccgagctgactgtaatatgatctttctctacccttt |
2039048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 25074550 - 25074633
Alignment:
| Q |
156 |
ataaaaagtggaattagattgagatatacaatgttttcttcttcaatacccagctgactgtaatatgacctttttctacccttt |
239 |
Q |
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||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||| |
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| T |
25074550 |
ataaaaagtggaattcgattgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctccacccttt |
25074633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 25132519 - 25132602
Alignment:
| Q |
156 |
ataaaaagtggaattagattgagatatacaatgttttcttcttcaatacccagctgactgtaatatgacctttttctacccttt |
239 |
Q |
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||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||| |
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| T |
25132519 |
ataaaaagtggaattcgattgagatgtacgatgttttcttcttcaatacccagctgactgtaatatgatctttctccacccttt |
25132602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34204608 - 34204537
Alignment:
| Q |
1 |
cctgaaatctca-ttatgccattaaacttggatgaaaattacaaacttatccctgatgtcatatctgtgttt |
71 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
34204608 |
cctgaaatctcaattatgccattaaactttgatgaaaattacaaacttatccctggtgtcatatttgtgttt |
34204537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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