View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_high_28 (Length: 250)
Name: NF2389_high_28
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44767104 - 44767345
Alignment:
| Q |
1 |
tacaacatatatgtaaaggaaaccagcctaaataaaatggaagacacttaacttaaaagagaaatttttnnnnnnnggttgaagagaaaaatgatagata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44767104 |
tacaacatatatgtaaaggaaaccagcctaaataaaatggaagacacttaacttaaaagagaaatttttaaaaaaaggttgaagagaaaaatgatagata |
44767203 |
T |
|
| Q |
101 |
ataaaaggtgcctggttccttcatattgatttcctacaattatattcattgcaataa--tgtgtctaaaaggagaacttttctccatctattttcctaaa |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44767204 |
ataaaaggtgcctggttccttcatattgatttcctacaattatattcattgcaataaaatgtgtctaaaaggagaacttttctccatctattttcctaaa |
44767303 |
T |
|
| Q |
199 |
actattatagaacaggtgaaccagcactctctgccctctgtg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
44767304 |
actattatagaacaggtgaaccagcactctctgccctctgtg |
44767345 |
T |
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