View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_high_3 (Length: 503)
Name: NF2389_high_3
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 8876509 - 8876985
Alignment:
| Q |
18 |
tgatcatgttgacaactagtaaactgagaggaagatcttatctgagaaaactttgtatttatacaaatacaaagttatgatgattgatcttctgcaggct |
117 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8876509 |
tgatcatgttgacaactagtaaactgagacgaagatcttatctgagaaaactttgtatttatacaaatacaaagttatgatgattgatcttctgcaggct |
8876608 |
T |
|
| Q |
118 |
cttacttgctagttcattccaacctctagttcagcctccaaagttacgatgatgattagttaaagataatgaagnnnnnnnnnnnnnagtatatgatgta |
217 |
Q |
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| T |
8876609 |
cttacttgctagttcattccaacctctagttcagcctccaaagctacaatgatgattagttaaagataatgaagttttttagtttttagtatatgatgta |
8876708 |
T |
|
| Q |
218 |
tgatctttatagtgtagggaaccatttacattgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatg |
317 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8876709 |
tgatctttgtagtgtagggaaccatttacaatgcataggacaatttgtttgggtgaatcaagatgctatagaggtagtttgctgatatgcacagtttatg |
8876808 |
T |
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| Q |
318 |
tgcttgctgacatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcaga-nnnnnnngactgcttttgc |
416 |
Q |
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| T |
8876809 |
tgcttgctgacatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagattttttttgactgcttttgc |
8876908 |
T |
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| Q |
417 |
caatgcatttcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
493 |
Q |
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| T |
8876909 |
caatgcatttcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctttg |
8876985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 220 - 491
Target Start/End: Complemental strand, 9394249 - 9393978
Alignment:
| Q |
220 |
atctttatagtgtagggaaccatttacattgcataggacaatttgtttgggtgaatcaaga---tgctatagaggtagtttgctgatatgcacagtttat |
316 |
Q |
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|||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
9394249 |
atctttatagtgcagggaaccatttacaatgcatattacaatttgtttgggtgaatcaagaagatgctatagaggtagtttgctgatatgcacaatttat |
9394150 |
T |
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| Q |
317 |
gtgcttgctgacatgttaggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgcagannnnnnngactgcttttgc |
416 |
Q |
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| T |
9394149 |
gtgcttgctgatatgataggaaccaaatgctgtctacaaaagatatatgtatgtgactaatacttatacatatattgtagatttta---actgcttttgc |
9394053 |
T |
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| Q |
417 |
caatgcatttcatgctctacagctactcaaaattcctgaatccaggttagactatgatgtcattcataatgcctt |
491 |
Q |
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| T |
9394052 |
caatgcatctcatgcactacagccactcaaagttcctgaatccaggttagactatgttgttattcttaatgcctt |
9393978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 9394492 - 9394312
Alignment:
| Q |
18 |
tgatcatgttgacaactagtaaactgagaggaagatcttatctgagaaaactttgtatttatacaaatacaaagttatgatgattgatcttctgcaggct |
117 |
Q |
| |
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||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| |
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| T |
9394492 |
tgatcatgttgacaacttgtaaattgagacaaagatcttatatgagaaaactttgtatttatacaaatacagagttatgatcattgatcttctgcatgct |
9394393 |
T |
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| Q |
118 |
ct-------tacttgctagttcattccaacctctagttcagcctccaaagttacgatgatgattagttaaagataatgaag |
191 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
9394392 |
cttgaacactacttgctagttcattccaacctctagttcggcctccaaagttacggtaatgattagttaaagataatgaag |
9394312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 467
Target Start/End: Complemental strand, 336224 - 336119
Alignment:
| Q |
361 |
atatgtatgtgactaatacttatacatatatt--gcagannnnnnngactgcttttgccaatgcatttcatgctctacagctactcaaaattcctgaatc |
458 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| || |
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| T |
336224 |
atatgtatgtgactaatactcctacatatattttgcagatttt---gactgcttttgccaatgcatttcatgctctacagccactcaaagttcctggatt |
336128 |
T |
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| Q |
459 |
caggttaga |
467 |
Q |
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||||||||| |
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| T |
336127 |
caggttaga |
336119 |
T |
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