View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2389_high_8 (Length: 437)

Name: NF2389_high_8
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2389_high_8
NF2389_high_8
[»] chr4 (25 HSPs)
chr4 (18-423)||(46548926-46549328)
chr4 (190-409)||(43958997-43959212)
chr4 (240-423)||(33491654-33491833)
chr4 (240-423)||(27736641-27736821)
chr4 (221-423)||(37748601-37748799)
chr4 (240-411)||(42881093-42881260)
chr4 (240-413)||(46663510-46663679)
chr4 (190-423)||(51944602-51944831)
chr4 (187-423)||(408237-408469)
chr4 (190-302)||(30060533-30060645)
chr4 (236-408)||(34595019-34595188)
chr4 (372-423)||(11038230-11038281)
chr4 (372-413)||(50187681-50187722)
chr4 (372-423)||(1433990-1434041)
chr4 (240-302)||(50189304-50189366)
chr4 (262-360)||(28967766-28967864)
chr4 (231-301)||(42854989-42855060)
chr4 (101-167)||(7591686-7591755)
chr4 (241-302)||(31908733-31908794)
chr4 (241-302)||(39161855-39161916)
chr4 (241-302)||(47302687-47302748)
chr4 (372-412)||(24980124-24980164)
chr4 (372-412)||(29582149-29582189)
chr4 (246-302)||(43363619-43363675)
chr4 (372-412)||(46215955-46215995)
[»] chr7 (19 HSPs)
chr7 (227-423)||(47258720-47258913)
chr7 (240-423)||(29682212-29682392)
chr7 (227-412)||(15584581-15584762)
chr7 (240-423)||(16086999-16087178)
chr7 (217-423)||(41742749-41742952)
chr7 (240-423)||(43631108-43631288)
chr7 (241-409)||(2290968-2291132)
chr7 (240-357)||(23561342-23561458)
chr7 (247-412)||(17020214-17020375)
chr7 (372-423)||(15591558-15591609)
chr7 (314-423)||(30878487-30878596)
chr7 (54-167)||(8969808-8969926)
chr7 (241-302)||(41809490-41809551)
chr7 (227-285)||(9985105-9985163)
chr7 (241-302)||(30936148-30936209)
chr7 (372-408)||(23561293-23561329)
chr7 (372-412)||(26605239-26605279)
chr7 (372-412)||(30317368-30317408)
chr7 (219-302)||(41046870-41046954)
[»] chr3 (21 HSPs)
chr3 (190-422)||(52024441-52024669)
chr3 (178-302)||(54262535-54262659)
chr3 (240-423)||(19914208-19914387)
chr3 (240-423)||(35748975-35749153)
chr3 (239-423)||(23795951-23796131)
chr3 (241-423)||(5528868-5529046)
chr3 (236-423)||(45635730-45635915)
chr3 (239-423)||(50029803-50029985)
chr3 (227-302)||(52162674-52162749)
chr3 (239-408)||(29806198-29806363)
chr3 (240-423)||(8433601-8433779)
chr3 (372-423)||(8966089-8966140)
chr3 (372-423)||(45602214-45602265)
chr3 (243-423)||(9252026-9252203)
chr3 (240-302)||(45602077-45602139)
chr3 (219-287)||(882030-882099)
chr3 (239-302)||(42657865-42657928)
chr3 (372-412)||(14653966-14654006)
chr3 (372-412)||(40784707-40784747)
chr3 (372-412)||(41982169-41982209)
chr3 (372-412)||(47746012-47746052)
[»] chr1 (29 HSPs)
chr1 (241-423)||(24245536-24245714)
chr1 (241-423)||(48796203-48796381)
chr1 (240-423)||(34100766-34100945)
chr1 (240-411)||(30547794-30547963)
chr1 (239-423)||(45809616-45809799)
chr1 (239-423)||(17525610-17525791)
chr1 (240-423)||(51610589-51610770)
chr1 (219-413)||(25081790-25081980)
chr1 (240-302)||(24511870-24511932)
chr1 (240-302)||(42958894-42958956)
chr1 (241-423)||(32144723-32144900)
chr1 (251-423)||(46707408-46707579)
chr1 (239-302)||(12178890-12178953)
chr1 (372-412)||(42959006-42959046)
chr1 (372-412)||(44382199-44382239)
chr1 (247-302)||(52365643-52365698)
chr1 (374-423)||(24511762-24511811)
chr1 (232-300)||(29852234-29852302)
chr1 (374-409)||(52365756-52365791)
chr1 (310-412)||(26307667-26307766)
chr1 (241-302)||(18992641-18992702)
chr1 (241-302)||(28791421-28791482)
chr1 (374-423)||(31401529-31401577)
chr1 (241-302)||(35910454-35910515)
chr1 (372-412)||(2620857-2620897)
chr1 (372-412)||(3399337-3399377)
chr1 (372-412)||(5956710-5956750)
chr1 (372-412)||(23056883-23056923)
chr1 (372-412)||(47693383-47693423)
[»] chr8 (15 HSPs)
chr8 (240-423)||(24937638-24937819)
chr8 (239-423)||(27172087-27172268)
chr8 (239-408)||(31158743-31158908)
chr8 (239-423)||(17792377-17792558)
chr8 (240-357)||(6631350-6631466)
chr8 (219-302)||(36274596-36274679)
chr8 (240-423)||(36672063-36672243)
chr8 (374-423)||(24377485-24377534)
chr8 (372-413)||(35588122-35588163)
chr8 (227-302)||(32238227-32238301)
chr8 (183-302)||(24377593-24377712)
chr8 (241-302)||(529561-529622)
chr8 (384-413)||(6630879-6630908)
chr8 (241-302)||(19718373-19718434)
chr8 (241-302)||(43049826-43049887)
[»] chr2 (12 HSPs)
chr2 (240-413)||(4114715-4114885)
chr2 (239-411)||(10456099-10456267)
chr2 (240-423)||(16114517-16114697)
chr2 (233-302)||(16637075-16637144)
chr2 (240-423)||(38617781-38617959)
chr2 (219-302)||(14947455-14947538)
chr2 (372-423)||(17821695-17821746)
chr2 (246-302)||(33494225-33494281)
chr2 (372-423)||(33494105-33494156)
chr2 (231-287)||(19203875-19203931)
chr2 (241-302)||(6438226-6438287)
chr2 (375-423)||(16637211-16637259)
[»] chr6 (11 HSPs)
chr6 (239-413)||(21970491-21970661)
chr6 (240-423)||(29023672-29023849)
chr6 (240-423)||(31644463-31644642)
chr6 (227-422)||(6093826-6094017)
chr6 (372-423)||(12782820-12782871)
chr6 (190-411)||(18667690-18667910)
chr6 (374-423)||(4979273-4979322)
chr6 (219-302)||(4979131-4979214)
chr6 (230-287)||(27109049-27109106)
chr6 (230-287)||(27150846-27150903)
chr6 (241-302)||(17010653-17010714)
[»] chr5 (24 HSPs)
chr5 (187-423)||(36156015-36156247)
chr5 (240-423)||(2270837-2271016)
chr5 (240-413)||(10400754-10400922)
chr5 (227-408)||(10568521-10568697)
chr5 (201-411)||(40584877-40585083)
chr5 (240-423)||(17069159-17069338)
chr5 (190-409)||(13645523-13645738)
chr5 (239-413)||(32455478-32455650)
chr5 (240-423)||(43059538-43059717)
chr5 (240-423)||(24431853-24432032)
chr5 (219-302)||(39041338-39041421)
chr5 (240-302)||(1445779-1445841)
chr5 (372-423)||(23258708-23258759)
chr5 (372-423)||(38354896-38354947)
chr5 (372-409)||(39041487-39041524)
chr5 (227-302)||(23258569-23258644)
chr5 (248-302)||(33654890-33654944)
chr5 (374-423)||(1445900-1445949)
chr5 (241-302)||(1490741-1490802)
chr5 (246-287)||(32624482-32624523)
chr5 (372-412)||(3425975-3426015)
chr5 (372-412)||(5359909-5359949)
chr5 (372-412)||(12334490-12334530)
chr5 (372-412)||(21051487-21051527)
[»] scaffold0008 (1 HSPs)
scaffold0008 (190-301)||(45365-45476)
[»] scaffold0174 (1 HSPs)
scaffold0174 (190-302)||(32818-32930)
[»] scaffold0775 (1 HSPs)
scaffold0775 (372-423)||(28-79)
[»] scaffold0005 (1 HSPs)
scaffold0005 (226-287)||(271009-271070)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 46549328 - 46548926
Alignment:
Q  18 aaccattgtcggttaggctactattattcgagatgtagttggtggtaaaagttgacaacttatccaagagtggccaccgtatcccattctctcctttgtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  46549328 aaccattgtcggttaggctactattattcgagatgtagttggtggtaaaagttgacaacttatccaagagtggtcaccgtatcccaatctctcctttgtc 46549229  T
Q  118 ttttattaacaatattttataattagaatgatgaaaaataatttgaaaagttgaacccattaaagttttggaaacttctaccatacattcgtaaactatg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||| ||||    
T  46549228 ttttattaacaatattttataattagaatgatgaaaaataatttgaaaagttgaacccattatagttttgggaacttctacgatacactcgtaaattatg 46549129  T
Q  218 atgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattattt 317  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||       ||||||||    
T  46549128 atgtactgatactcttgctttctaaatctataaattaacgataaattttatgaaataaatagtta-ttgttggcatttatatttt-aaaaaatattattt 46549031  T
Q  318 cataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagcttta 417  Q
    |||||||||||||||| ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  46549030 cataagaaaaacacatcatttgttgtttatatgaatcataatata-ttatttttacatattatcgtataaaataatcaaagttctctattatgagcttta 46548932  T
Q  418 aaaatt 423  Q
    ||||||    
T  46548931 aaaatt 46548926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 190 - 409
Target Start/End: Original strand, 43958997 - 43959212
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| | ||||| |||| ||||| | |||| ||  || ||||||||||||||||||||| |||||||| ||||||||||| |||||| |    
T  43958997 aacttctacggtacacttgtaaattatggtgtaccggtactcttacttcctaaatctataaattaacgatcaattttatgaaataaatagtcatttgtcg 43959096  T
Q  290 gcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaa 389  Q
    |||||||||||||        || |||||||||||||||||||| |||  ||||||||| || |||||||| |         ||||||||||||||||||    
T  43959097 gcatttatattttagaaaac-atcatttcataagaaaaacacattattcattgtttataagagtcataataaa---attttaacatattatcgtataaaa 43959192  T
Q  390 taatcaaagttctctattat 409  Q
    ||||||||||||||||||||    
T  43959193 taatcaaagttctctattat 43959212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 33491654 - 33491833
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||| ||||||||  ||| |||      
T  33491654 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt-agaaaatatgatttcagaagaaaaatgcatcattca 33491752  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| |||          ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  33491753 ttgtttataagaatcatagtat---ttcttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 33491833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 27736641 - 27736821
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||| |||||||||||||  ||      
T  27736641 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt-agaaaatatgatttcagaagaaaaacacatcgttca 27736739  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| |||          |||||||||||||||||||||||||| ||||||||||| |||  ||||||||    
T  27736740 ttgtttataagaatcatagtat--ttttttttacatattatcgtataaaataatcaaatttctctattataagcgataaaaatt 27736821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 221 - 423
Target Start/End: Complemental strand, 37748799 - 37748601
Alignment:
Q  221 tactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcat 320  Q
    ||||| |||| ||||||  |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||       | | ||||||     
T  37748799 tactggtactcttgtttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt-aaaaaatgtgatttcag 37748701  T
Q  321 aagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaa 420  Q
    ||||||||| ||| |||  ||||||||| |||||||| ||           |||||||||||||||||||||||||| |||||||||||||||  |||||    
T  37748700 aagaaaaacgcatcattcattgtttataagaatcatagta---atttttttacatattatcgtataaaataatcaaaattctctattatgagcgataaaa 37748604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 411
Target Start/End: Original strand, 42881093 - 42881260
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    ||||||||||||||||| || |||||||| |||||||||||||||| | ||||||||||||||       |||  | ||||||||||||||||| |||      
T  42881093 taaatctataaattaacaatcaattttatgaaataaatagttatttatcggcatttatatttt-agaaaatatcttctcataagaaaaacacatcattca 42881191  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatga 411  Q
    ||||||||| |||||||| || |         ||||||||||||||| ||||||||||||||||||||||||    
T  42881192 ttgtttataagaatcatagtaaa---tttttaacatattatcgtatacaataatcaaagttctctattatga 42881260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 413
Target Start/End: Complemental strand, 46663679 - 46663510
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||  ||||||||| ||| |||      
T  46663679 taaatctataaattaatgatcaattttatgaaataaatagttatttgtcggcatttatatttt-aaaaaatatgatttccgaagaaaaacgcatcattca 46663581  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagc 413  Q
    ||||||||| |||||||| ||           ||||||||||||||||  ||||||||||||||||||||||||    
T  46663580 ttgtttataagaatcatagta---atttttttacatattatcgtataacgtaatcaaagttctctattatgagc 46663510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 423
Target Start/End: Complemental strand, 51944831 - 51944602
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| ||||||| |  | |||| || |||||||| ||  ||||| |||||||||| ||| |||||||| |||||||||||||||| | |    
T  51944831 aacttctactttacactcgtaaattgaggtgtattggtacttttgcttcataaatttataaattaatgatcaattttatgaaataaatagttatttatcg 51944732  T
Q  290 gcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaa 389  Q
    |||||||||||||       ||| |||||  ||||||||| ||| |||  ||||||||| |||||||| ||           |||||||||||||||||     
T  51944731 gcatttatatttt-aaaaaatatgatttccgaagaaaaacgcatcattcattgtttataagaatcatagta---atttttttacatattatcgtataaag 51944636  T
Q  390 taatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||||||||||  ||||||||    
T  51944635 taatcaaagttctctattatgagcgataaaaatt 51944602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 187 - 423
Target Start/End: Complemental strand, 408469 - 408237
Alignment:
Q  187 ggaaacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttg 286  Q
    ||||||||||||  |||| ||||||| |  | ||||| | |||| ||| ||  |||||||||||| ||||||| |||||||| |||||||||||||||||    
T  408469 ggaaacttctacggtacactcgtaaattgaggtgtaccggtactcttgcttcataaatctataaactaacgatcaattttattaaataaatagttatttg 408370  T
Q  287 ttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtata 386  Q
    | || |||||||||||       ||| |||||| ||||||||  |||  ||  ||||||||| |||||||| ||           |||||||||||||||    
T  408369 tcggaatttatatttt-agaaaatatgatttcagaagaaaaatgcatcgttcattgtttataagaatcatagta---attcttttacatattatcgtata 408274  T
Q  387 aaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||||| ||||||||||||||  ||||||||    
T  408273 aaataatcaaagctctctattatgagcgataaaaatt 408237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 190 - 302
Target Start/End: Original strand, 30060533 - 30060645
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| ||||||| |  | ||||| |||||| ||| ||  |||||||||||| ||||||| |||||||| |||||||||||||||||| |    
T  30060533 aacttctacggtacactcgtaaattgaggtgtaccgatactcttgcttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcg 30060632  T
Q  290 gcatttatatttt 302  Q
    |||||||||||||    
T  30060633 gcatttatatttt 30060645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 408
Target Start/End: Original strand, 34595019 - 34595188
Alignment:
Q  236 tttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataa 335  Q
    ||||||||| |||| |||||| || |||||||| ||||||||||||||||||  |||||||||| |        ||| ||||||| | |||||||||| |    
T  34595019 tttctaaatttatacattaacaatcaattttatgaaataaatagttatttgtcagcatttatatat-cagaaaatatcatttcatgataaaaacacatca 34595117  T
Q  336 tttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctatta 408  Q
    ||  ||||||||| |||||||||||           |||||||||||||||||||||||||||||||||||||    
T  34595118 ttcattgtttataagaatcataata--agtttttttacatattatcgtataaaataatcaaagttctctatta 34595188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 11038230 - 11038281
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  11038230 acatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 11038281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 50187722 - 50187681
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50187722 acatattatcgtataaaataatcaaagttctctattatgagc 50187681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 1433990 - 1434041
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  1433990 acatattatcgtataaaataattaaagttctctattatgagcaataaaaatt 1434041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 50189366 - 50189304
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||| ||||||| |||||||| |||||||||  ||||||| ||||||||||||||    
T  50189366 taaatctataaactaacgatcaattttatgaaataaataaatatttgtcggcatttatatttt 50189304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 360
Target Start/End: Complemental strand, 28967864 - 28967766
Alignment:
Q  262 attttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataata 360  Q
    ||||||| |||||||| ||||||||| ||||||||||| |        ||| |||||||||||||||||||| |||  ||||||||| |||||||||||    
T  28967864 attttatgaaataaatggttatttgtcggcatttatatctcagaaaaatatcatttcataagaaaaacacatcattcattgtttataagaatcataata 28967766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 42855060 - 42854989
Alignment:
Q  231 tttgttttctaaatctataaattaacgataaatttt-ataaaataaatagttatttgttggcatttatattt 301  Q
    |||||||||||||||||||| ||||  || |||||| |||||||||| || ||||||| | |||||||||||    
T  42855060 tttgttttctaaatctataatttaataattaatttttataaaataaagagctatttgtcgacatttatattt 42854989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 7591755 - 7591686
Alignment:
Q  101 ccattctctcctttgtcttttattaacaatattttat-aattagaatgatg--aaaaataatttgaaaag 167  Q
    ||||| |||||| | ||||||||| |||||||||||| ||||| |||||||  |||||||||||||||||    
T  7591755 ccattatctcctctttcttttattgacaatattttataaattaaaatgatgaaaaaaataatttgaaaag 7591686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 31908794 - 31908733
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||| ||||||||||| || |||||||| ||||||| || |||||||||  |||||||||||    
T  31908794 aaatttataaattaactatcaattttatgaaataaaaagctatttgttgatatttatatttt 31908733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 39161855 - 39161916
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||| ||||||||| || | ||||||| |||||| ||||||||||||  |||||||||||    
T  39161855 aaatctttaaattaactattatttttatagaataaagagttatttgttgatatttatatttt 39161916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 47302748 - 47302687
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||| ||||||||| || | |||||| ||||||| ||||||||||||  |||||||||||    
T  47302748 aaatctttaaattaactattatttttatgaaataaagagttatttgttgatatttatatttt 47302687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 24980124 - 24980164
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  24980124 acatattatcgtaaaaaataatcaatgttctcaattatgag 24980164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 29582189 - 29582149
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  29582189 acatattatcgtaaaaaataatcaatgttctcaattatgag 29582149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 43363675 - 43363619
Alignment:
Q  246 tataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||||| | |||||| |||||||||||||||| ||   |||||||||||    
T  43363675 tataaattaacgatcatttttatgaaataaatagttatttattaatatttatatttt 43363619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 46215955 - 46215995
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||| |||||||| |||||||||||| ||||||||||||||    
T  46215955 acattttatcgtaaaaaataatcaaaattctctattatgag 46215995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 227 - 423
Target Start/End: Original strand, 47258720 - 47258913
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaa 326  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||       ||| |||||||||||||    
T  47258720 tacttttgttttctaagtctataaattaacgatcaattttataaaataaatatttatttattggcatttatatttt-aaaaaatatcatttcataagaaa 47258818  T
Q  327 aacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||| | |||  ||||||||| ||||  || || |         |||||||||||||||||||||||||| ||||||| |||||||  ||||||||    
T  47258819 aacacgtcattcattgtttataagaattttagtaga--catttttacatattatcgtataaaataatcaaaattctctaatatgagcgataaaaatt 47258913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 423
Target Start/End: Complemental strand, 29682392 - 29682212
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||||| |||       ||| |||||  |||||||||||||||||      
T  29682392 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttata-tttaaaaaaatatgatttctgaagaaaaacacataattca 29682294  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| ||||||||  |||         |||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  29682293 ttgtttataagaatcata--ataattttttttacatattatcgtataaaataattaaagttctctattatgagcgataaaaatt 29682212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 227 - 412
Target Start/End: Original strand, 15584581 - 15584762
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaa 326  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||       ||| |||||||||||||    
T  15584581 tactcttgtttcctaaatctataaattaacgatcaattttataaaacaaatagttatttatcggcatttatatttt-agaaaatataatttcataagaaa 15584679  T
Q  327 aacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||  | || | ||||||||| |||||||| || |         ||||||||| |||||||||||||||||||||||||||||||    
T  15584680 aacaagtcatctattgtttataagaatcatagtaaa---ttttttacatattattgtataaaataatcaaagttctctattatgag 15584762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 16086999 - 16087178
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| | ||||||||||||       ||| |||||| ||||||||| ||| |||      
T  16086999 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaa-tatgatttcagaagaaaaacgcatcattca 16087097  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| ||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  16087098 ttgtttataagaatcatagta---atttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 16087178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 217 - 423
Target Start/End: Complemental strand, 41742952 - 41742749
Alignment:
Q  217 gatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatt 316  Q
    ||||||| |||||| ||||||  |||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||||||||       | | |||    
T  41742952 gatgtaccgatactcttgtttcataaatctataaattaacgatcaattttatgaaataaatagttatttgtctgcatttatatttt-agaaaatgtgatt 41742854  T
Q  317 tcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagcttt 416  Q
    ||| ||||||||| ||| |||  ||||||||| ||||||||  |||         | |||||||| |||||||||||||||||| ||||||||||||  |    
T  41742853 tcagaagaaaaacgcatcattcattgtttataagaatcata--ataattttttttatatattatcatataaaataatcaaagttatctattatgagcgat 41742756  T
Q  417 aaaaatt 423  Q
    |||||||    
T  41742755 aaaaatt 41742749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 43631108 - 43631288
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| | ||||||||||||       ||| |||||| ||||||||| ||| |||      
T  43631108 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatatttt-agaaaatatgatttcagaagaaaaacgcatcattca 43631206  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| ||||||||   ||         |||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  43631207 ttgtttataagaatcata--gtaattttttttacatattatcgtataaaataattaaagttctctattatgagcgataaaaatt 43631288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 409
Target Start/End: Complemental strand, 2291132 - 2290968
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgt 340  Q
    |||| |||||||||| ||| |||||||| |||||||||||||||||| || |||||||||||       ||||||||||||||||||| |||| | |  |    
T  2291132 aaatttataaattaatgatcaattttatgaaataaatagttatttgtcggtatttatattttagaaaa-tattatttcataagaaaaatacattaatcat 2291034  T
Q  341 tgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattat 409  Q
    |||||||| |||||||| || |         ||||||||||||||||||||||||||||||||||||||    
T  2291033 tgtttataagaatcatagtaaatttttt---acatattatcgtataaaataatcaaagttctctattat 2290968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 23561458 - 23561342
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| |||||| |||||||       ||| ||||||||||||||||| || |||      
T  23561458 taaatctataaattaacgatcaattttatgaaataaatagttatttgtaggcattgatatttt-agaaaatatcatttcataagaaaaacatatcattca 23561360  T
Q  340 ttgtttatatgaatcata 357  Q
    ||||||||| ||||||||    
T  23561359 ttgtttataagaatcata 23561342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 412
Target Start/End: Complemental strand, 17020375 - 17020214
Alignment:
Q  247 ataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgttta 346  Q
    ||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||       ||| |||||  ||||||||||||| |||  |||||||    
T  17020375 ataaattaacgatcaattttattaagtaaatagttatttgtcggcatttatatttt-agaaaatatgatttctgaagaaaaacacatcattcattgttta 17020277  T
Q  347 tatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgag 412  Q
    || |||| ||| ||           ||||||||| |||||||||||||||||||||||||||||||    
T  17020276 taagaatgatagta---atttttttacatattattgtataaaataatcaaagttctctattatgag 17020214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 15591609 - 15591558
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  15591609 acatattatcgtataaaataatcaaagttctctattatgagcaataaaaatt 15591558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 314 - 423
Target Start/End: Complemental strand, 30878596 - 30878487
Alignment:
Q  314 atttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagc 413  Q
    |||||||||||||||||||| |||  ||||||||| |||||||| ||           |||||||||||||||||||||||||||| |||||||||||||    
T  30878596 atttcataagaaaaacacatcattcattgtttataagaatcatagtaattttttttttacatattatcgtataaaataatcaaagtactctattatgagc 30878497  T
Q  414 tttaaaaatt 423  Q
      ||||||||    
T  30878496 gataaaaatt 30878487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 8969808 - 8969926
Alignment:
Q  54 agttggtggtaaaagttgacaacttatccaagagtggccaccgta---tcccattctctcctttgtcttttattaacaatattttat-aattagaatgat 149  Q
    ||||| ||||||||| || |||| ||||||||| |||  ||||||   | ||||| |||||| | ||||||||| |||||||||||| ||||| ||||||    
T  8969808 agttgatggtaaaaggtggcaacgtatccaagaatgggtaccgtacgtttccattatctcctctttcttttattgacaatattttataaattaaaatgat 8969907  T
Q  150 g-aaaaataatttgaaaag 167  Q
    | |||||||||||||||||    
T  8969908 gaaaaaataatttgaaaag 8969926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 41809551 - 41809490
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||||||| || |||||||| ||||||| | ||||||||||  |||||||||||    
T  41809551 aaatctataaattaactatcaattttatgaaataaagaattatttgttgatatttatatttt 41809490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 9985105 - 9985163
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttattt 285  Q
    |||||||||||| |||||| |||||||||||| || ||| ||||||||||  |||||||    
T  9985105 tacttttgttttttaaatcaataaattaacgacaattttcataaaataaaatgttattt 9985163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 30936148 - 30936209
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||| ||||||||||| || |||||||| ||||||| || |||||||||  |||||||||||    
T  30936148 aaatttataaattaactatcaattttatgaaataaaaagctatttgttgatatttatatttt 30936209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 23561329 - 23561293
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctatta 408  Q
    |||||||||| |||||||| |||||||||||||||||    
T  23561329 acatattatcatataaaattatcaaagttctctatta 23561293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 26605239 - 26605279
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  26605239 acatattatcgtaaaaaataatcaatgttctcaattatgag 26605279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 30317408 - 30317368
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||| |||||||| |||||||||||| ||||||||||||||    
T  30317408 acattttatcgtaaaaaataatcaaaattctctattatgag 30317368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 41046870 - 41046954
Alignment:
Q  219 tgtactgatacttttgttttctaaatctataaattaacgataa-attttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||| |||||| ||| ||| ||| | ||||||||||||||||  |||||| | |||||||||||||||||   |||||||||||    
T  41046870 tgtaccgatactattgctttataattttataaattaacgataattttttatgatataaatagttatttgttaatatttatatttt 41046954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 190 - 422
Target Start/End: Original strand, 52024441 - 52024669
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| ||||||| |  | ||||| | |||| ||||||  |||||||||||| ||||||| |||||||| |||||||||||||||||| |    
T  52024441 aacttctactgtacactcgtaaattgaggtgtacaggtactcttgtttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcg 52024540  T
Q  290 gcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaa 389  Q
    |||||||||||||       ||| |||||| |||||||| |||| |||  ||||||||| |||||||| ||           ||||||||||||||||||    
T  52024541 gcatttatatttt-agaaaatatgatttcagaagaaaaatacatcattcattgtttataagaatcatagta---attttttaacatattatcgtataaaa 52024636  T
Q  390 taatcaaagttctctattatgagctttaaaaat 422  Q
    ||||||||||||||||||||||||  |||||||    
T  52024637 taatcaaagttctctattatgagcgctaaaaat 52024669  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 178 - 302
Target Start/End: Original strand, 54262535 - 54262659
Alignment:
Q  178 taaagttttggaaacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaat 277  Q
    |||| |||||| |||||||||  |||||  ||||| |||| ||||| |||||| ||| ||  ||||||||||||||||| || |||||||| ||||||||    
T  54262535 taaatttttgggaacttctacggtacatcagtaaattatggtgtaccgatactcttgcttcttaaatctataaattaacaatcaattttatgaaataaat 54262634  T
Q  278 agttatttgttggcatttatatttt 302  Q
    ||||||||||||||||||| |||||    
T  54262635 agttatttgttggcatttagatttt 54262659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 423
Target Start/End: Complemental strand, 19914387 - 19914208
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||| ||||||||  ||| |||      
T  19914387 taaatctataaattaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt-agaaaatatgatttcagaagaaaaatgcatcattca 19914289  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| ||           ||||||||||| ||||||||||||||||| ||||||||||||  ||||||||    
T  19914288 ttgtttataagaatcatagta---atttttttacatattatcggataaaataatcaaagttatctattatgagcgataaaaatt 19914208  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 35748975 - 35749153
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||  ||||||||| ||| |||      
T  35748975 taaatctataaattaatgatcaattttatcaaataaatagttatttgtcggcatttatatttt-aaaaaatatgatttccgaagaaaaacgcatcattca 35749073  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| ||           ||||||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  35749074 ttgtttataagaatcatagta----attttttacatattatcgtataaagtaatcaaagttctctattatgagcgataaaaatt 35749153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 423
Target Start/End: Complemental strand, 23796131 - 23795951
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||       ||| || |||||||||||| |||  |||     
T  23796131 ctaaatctataaattaacgatcaattttatgaaataaataattatttgtcggcatttatatttt-agaaaatatcatgtcataagaaaaatacaacattc 23796033  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     |||||||||  ||||||| || |         |||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  23796032 attgtttataaaaatcatagtaaa---tttttaacatattatcatataaaataatcaaagttctctattatgagcgataaaaatt 23795951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 241 - 423
Target Start/End: Complemental strand, 5529046 - 5528868
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgt 340  Q
    ||||||||||||||| ||| |||||||| ||||| |||||||||||| |  |||||||||||       ||| ||||||||| |||||||||| |||  |    
T  5529046 aaatctataaattaatgatcaattttatgaaatagatagttatttgtcgctatttatattttataaaa-tatcatttcataataaaaacacatcattcat 5528948  T
Q  341 tgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||| |||||||| || |         |||||||||||||| |||||||||||||||||||||||||||  ||||||||    
T  5528947 tgtttataagaatcatagtaaatttttt---acatattatcgtatgaaataatcaaagttctctattatgagcaataaaaatt 5528868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 423
Target Start/End: Original strand, 45635730 - 45635915
Alignment:
Q  236 tttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataa 335  Q
    ||||||||| |||| |||||| || |||| ||| ||||||||||||||||||  |||||||||| |        ||| ||||||||||| |||||||| |    
T  45635730 tttctaaatttatacattaacaatcaattctatgaaataaatagttatttgtcagcatttatatct-cagaaaatatcatttcataagataaacacatca 45635828  T
Q  336 tttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||  ||||||||| |||||||| || |         ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  45635829 ttcattgtttataagaatcatagta-atttttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 45635915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 423
Target Start/End: Original strand, 50029803 - 50029985
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||| |||| |||||| || |||||||| |||||||||||||||| |  |||||||||| |        ||| |||||||||||||||||||| | |     
T  50029803 ctaaatttatacattaacaatcaattttatgaaataaatagttatttttccgcatttatatctcagaaaaatatcatttcataagaaaaacacatcactc 50029902  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     || |||||| ||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  50029903 attatttataagaatcataataaattttttt--acatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 50029985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 52162749 - 52162674
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||| |||||| ||||||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||    
T  52162749 tactcttgtttcctaaatctataaattaacgatcaattttataaaacaaatagttatttatcggcatttatatttt 52162674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 29806363 - 29806198
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||||||||||||||| || |||||||| ||||||||| |||||||   |||||||||||||       ||| |||||||||||||||||||| |||     
T  29806363 ctaaatctataaattaacaattaattttatgaaataaataattatttgccagcatttatatttt-agaaaatatcatttcataagaaaaacacatcattc 29806265  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctatta 408  Q
     ||||||||| |||||||| || |          ||||||||| ||||||||||||||||||||||||||    
T  29806264 attgtttatacgaatcatagtaaatttttgt---catattatcatataaaataatcaaagttctctatta 29806198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 423
Target Start/End: Complemental strand, 8433779 - 8433601
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    ||||| ||||||||||| || |||||||| |||||||||||||||||| ||||||||||||||         | || |||||| |||||||||| |||      
T  8433779 taaatttataaattaacaattaattttatgaaataaatagttatttgtcggcatttatattttagaaaat--tcatgtcataataaaaacacatcattca 8433682  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| ||           |||| ||||||||||||||||| |||||||||||||||||||  ||||||||    
T  8433681 ttgtttataagaatcatagta---atttttttacatgttatcgtataaaataataaaagttctctattatgagcgataaaaatt 8433601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 8966140 - 8966089
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8966140 acatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 8966089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 45602214 - 45602265
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  45602214 acatattatcatataaaataatcaaagttctctattatgagcgttaaaaatt 45602265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 423
Target Start/End: Complemental strand, 9252203 - 9252026
Alignment:
Q  243 atctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttg 342  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| ||||   |||||||       ||| |||||| ||||||||  ||| |||  |||    
T  9252203 atctataaattaacgatcaattttatgaaataaatagttatttgtcggca---atattttagaaaa-tatgatttcagaagaaaaatgcatcattcattg 9252108  T
Q  343 tttatatgaatcataata-tannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||| |||||||| || |          ||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  9252107 tttataagaatcatagtaatttttttttttacatattatcgtataaaataatcaaagttctcttttatgagcgataaaaatt 9252026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 45602077 - 45602139
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||   |||||||||||||    
T  45602077 taaatctataaattaacgattaattttatgaaataaatagttatttgccagcatttatatttt 45602139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 882099 - 882030
Alignment:
Q  219 tgtactgatacttttgtttt-ctaaatctataaattaacgataaattttataaaataaatagttatttgt 287  Q
    ||||| |||||||||||||  | |||| |||||||||||||| | |||||||||||||| ||||||||||    
T  882099 tgtaccgatacttttgtttcacaaaatttataaattaacgatcatttttataaaataaaaagttatttgt 882030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 42657865 - 42657928
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||| |||||||||||| ||| |||||||  | ||||| |||||||| ||||||||||||||||    
T  42657865 ctaattctataaattaatgatcaattttaagatataaagagttatttattggcatttatatttt 42657928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 14653966 - 14654006
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  14653966 acatattatcgtaaaaaataatcaaggttctcaattatgag 14654006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 40784707 - 40784747
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  40784707 acatattatcgtaaaaaataatcaatgttctcaattatgag 40784747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 41982209 - 41982169
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  41982209 acatattatcgtaaaaaataatcaatgttctcaattatgag 41982169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 47746052 - 47746012
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  47746052 acatattatcgtaaaaaataatcaatgttctcaattatgag 47746012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 241 - 423
Target Start/End: Original strand, 24245536 - 24245714
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgt 340  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||  |||||||||||||       ||| |||||||||||||||||||| |||  |    
T  24245536 aaatctataaattaatgatcaattttattaaataaatagttatttgtcagcatttatatttt-agaaaatatcatttcataagaaaaacacatcattcat 24245634  T
Q  341 tgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||| ||||||||||| |         ||||||||||||||||||||||||||||| || |||||||||  ||||||||    
T  24245635 tgtttataagaatcataataaa---ttttttacatattatcgtataaaataatcaaagttttccattatgagcgataaaaatt 24245714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 423
Target Start/End: Complemental strand, 48796381 - 48796203
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgt 340  Q
    ||||||||||||||| ||| |||||||| |||||||||||||||||| | ||||||||||||       ||| |||||||||||||||||||| |||  |    
T  48796381 aaatctataaattaatgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaa-tatcatttcataagaaaaacacatcattcat 48796283  T
Q  341 tgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||| |||| ||| ||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  48796282 tgtttataagaataatagta---atttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 48796203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 34100766 - 34100945
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| | ||||||||||||       ||| |||||| ||||||||| ||| |||      
T  34100766 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatattttagaaaa-tatgatttcagaagaaaaacgcatcattca 34100864  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| ||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  34100865 ttgtttataagaatcatagta---atttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 34100945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 240 - 411
Target Start/End: Complemental strand, 30547963 - 30547794
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| | ||||||||||||       ||| |||||| ||||||||| ||| |||      
T  30547963 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcgacatttatatttt-agaaaatatgatttcagaagaaaaacgcatcattca 30547865  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatga 411  Q
    ||||||||| |||||||| |||          ||||||||||||||||||||||||||||||||||||||||    
T  30547864 ttgtttataagaatcatagtat-tttttttttacatattatcgtataaaataatcaaagttctctattatga 30547794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 423
Target Start/End: Complemental strand, 45809799 - 45809616
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||| |||| |||||| || |||||||| |||||||||||||||||| ||||||||||| ||       ||| |||| |||| |||||| ||| |||     
T  45809799 ctaaatttatacattaacaatcaattttatgaaataaatagttatttgtcggcatttatatcttagaaag-tatcattttataataaaaacccatcattc 45809701  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     ||||||||| |||||||||||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  45809700 tttgtttataagaatcataataagtttttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 45809616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 423
Target Start/End: Complemental strand, 17525791 - 17525610
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||| |||| |||||| || |||||||| |||||||||||||||||| ||||||||||| |        ||| |||||||||||||||||||| |||     
T  17525791 ctaaatttatacattaacaatcaattttatgaaataaatagttatttgtcggcatttatatct-caaaaaatatcatttcataagaaaaacacattattc 17525693  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     ||||||||| |||| ||||||           |||||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  17525692 attgtttataagaattataata--agtttttttacatattatcgtataaaataatcaaagttctctattattagcgataaaaatt 17525610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 51610589 - 51610770
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatat-tttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    ||||| |||||| |||| || |||||||| |||||||||||||||||| ||||||||||| |||       ||| |||||| ||||||||| ||| |||     
T  51610589 taaatttataaactaacaatcaattttatgaaataaatagttatttgtcggcatttatatattttagaaaatatgatttcagaagaaaaacgcatcattc 51610688  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     ||||||||| |||||||| ||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  51610689 attgtttataagaatcatagta---attttattacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 51610770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 413
Target Start/End: Original strand, 25081790 - 25081980
Alignment:
Q  219 tgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttc 318  Q
    ||||||| |||| ||||||  |||||||||||| ||||||| |||||||| ||||||||| |||||||| ||||||||||||||       ||| |||||    
T  25081790 tgtactggtactcttgtttcataaatctataaactaacgatcaattttatgaaataaataattatttgtcggcatttatatttt-agaaaatatgatttc 25081888  T
Q  319 ataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagc 413  Q
    | ||||||||| ||| |||  ||||||||| |||||||| ||           ||||| ||||||||||||||||||||||| | ||||||||||    
T  25081889 agaagaaaaacgcatcattaattgtttataagaatcatagta---atttttttacatactatcgtataaaataatcaaagttatttattatgagc 25081980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 302
Target Start/End: Complemental strand, 24511932 - 24511870
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  24511932 taaatttataaactaacgatcaattttatgaaataaatagttatttgttggcatttatatttt 24511870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 42958894 - 42958956
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  42958894 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt 42958956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 423
Target Start/End: Original strand, 32144723 - 32144900
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgt 340  Q
    |||| |||| |||||| || || ||||| |||||||||||||||||| ||||||||||| |        ||| |||||||||||||||||||| |||  |    
T  32144723 aaatttatatattaacaatcaactttatgaaataaatagttatttgtcggcatttatatct-cagaaaatatcatttcataagaaaaacacatcattcat 32144821  T
Q  341 tgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||| ||||||    |||         ||||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  32144822 tgtttataagaatca----ataattttttttacatattttcgtataaaataatcaaagttctctattatgagcgataaaaatt 32144900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 423
Target Start/End: Original strand, 46707408 - 46707579
Alignment:
Q  251 attaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatg 350  Q
    |||||| || |||||||| ||||||| |||||||||| ||||||| ||| |        ||| |||||||||||||||||||| |||  ||||||||| |    
T  46707408 attaacaatcaattttatgaaataaaaagttatttgtcggcatttgtatct-cagaaaatatcatttcataagaaaaacacatcattcattgtttataag 46707506  T
Q  351 aatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    | ||||||||           ||||||||||||||||||||||||||||| ||||||||||||  ||||||||    
T  46707507 agtcataataagtttttttttacatattatcgtataaaataatcaaagttttctattatgagcgataaaaatt 46707579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 12178953 - 12178890
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||  | ||||||||||||    
T  12178953 ctaaatctataaattaacgattaattttatgaaataaatagttatttgccgacatttatatttt 12178890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 42959006 - 42959046
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42959006 acatattatcgtataaaataatcaaagttctctattatgag 42959046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 44382199 - 44382239
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44382199 acatattatcgtataaaataatcaaagttctctattatgag 44382239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 302
Target Start/End: Original strand, 52365643 - 52365698
Alignment:
Q  247 ataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  52365643 ataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt 52365698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 24511811 - 24511762
Alignment:
Q  374 atattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  24511811 atattatcgtataaaataatcaaagttctctattataagcgataaaaatt 24511762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 29852234 - 29852302
Alignment:
Q  232 ttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatt 300  Q
    |||||||||||||| |||||||||| || | |||||| |||||||||||||||||| | | ||||||||    
T  29852234 ttgttttctaaatcaataaattaacaatcatttttatgaaataaatagttatttgtcgacttttatatt 29852302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 409
Target Start/End: Original strand, 52365756 - 52365791
Alignment:
Q  374 atattatcgtataaaataatcaaagttctctattat 409  Q
    ||||||||||||||||||||||||||||||||||||    
T  52365756 atattatcgtataaaataatcaaagttctctattat 52365791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 26307667 - 26307766
Alignment:
Q  310 tattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattat 409  Q
    ||||||||||||||||||||||||||||  || ||||||  ||||||| || |         |||||||||||||||||||||| ||| |||||||||||    
T  26307667 tattatttcataagaaaaacacataattcattatttataaaaatcatagtagatttttt---acatattatcgtataaaataattaaatttctctattat 26307763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 18992702 - 18992641
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||| ||||||||||| || | |||||||||||||  ||||||||| ||| |||||||||||    
T  18992702 aaatttataaattaactatcatttttataaaataaggagttatttgctggtatttatatttt 18992641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 28791421 - 28791482
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||| ||||||||| || | ||||||| |||||| ||||||||||||  |||||||||||    
T  28791421 aaatctttaaattaactattatttttatagaataaagagttatttgttgatatttatatttt 28791482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 31401577 - 31401529
Alignment:
Q  374 atattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||||||||||||||| |||||| |||  ||||||||    
T  31401577 atattatcgtataaaataatcaaagttct-tattattagccataaaaatt 31401529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 35910515 - 35910454
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||| ||||||||| || | ||||||| |||||| ||||||||||||  |||||||||||    
T  35910515 aaatctttaaattaactattatttttatagaataaagagttatttgttgatatttatatttt 35910454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 2620897 - 2620857
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||| |||||||| |||||||||||| ||||||||||||||    
T  2620897 acattttatcgtaaaaaataatcaaaattctctattatgag 2620857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 3399377 - 3399337
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  3399377 acatattatcgtaaaaaataatcaatgttctcaattatgag 3399337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 5956710 - 5956750
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||| |||||||| |||||||||||| ||||||||||||||    
T  5956710 acattttatcgtaaaaaataatcaaaattctctattatgag 5956750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 23056923 - 23056883
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||| |||||||| |||||||||||| ||||||||||||||    
T  23056923 acattttatcgtaaaaaataatcaaaattctctattatgag 23056883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 47693423 - 47693383
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  47693423 acatattatcgtaaaaaataatcaatgttctcaattatgag 47693383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 24937638 - 24937819
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    ||||| |||| |||||| || |||||||| |||||||||||||||||| ||||||||||| |        ||| ||||||||||||||| |||| ||||     
T  24937638 taaatttatacattaacaatcaattttatgaaataaatagttatttgtcggcatttatatct-cagaaaatatcatttcataagaaaaatacatcattta 24937736  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| ||||||||||| |         ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  24937737 ttgtttataagaatcataata-agttttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 24937819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 239 - 423
Target Start/End: Complemental strand, 27172268 - 27172087
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||| |||| |||||| || |||||||| |||||||||||||||||| ||||||||||| |        ||| |||||||||||||||||||| |||     
T  27172268 ctaaatttatacattaacaatcaattttatgaaataaatagttatttgtcggcatttatatct-cagaaaatatcatttcataagaaaaacacatcattc 27172170  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     ||||||||| |||||||||||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  27172169 attgtttataagaatcataata--agtttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 27172087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 408
Target Start/End: Complemental strand, 31158908 - 31158743
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||       ||| |||||||||||||||||||| |||     
T  31158908 ctaaatctataaattaacgattaattttatgaaataaatagttatttgccggcatttatatttt-aaaaaatatcatttcataagaaaaacacatcattc 31158810  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctatta 408  Q
     |||||||||  ||||||| || |          ||||||||| ||||||||||||||||||||||||||    
T  31158809 attgtttatactaatcatagtaaatttttgc---catattatcatataaaataatcaaagttctctatta 31158743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 239 - 423
Target Start/End: Complemental strand, 17792558 - 17792377
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||| |||| |||||| || |||||||| |||||||||||||||||| |||||||||| | |       ||| |||||||||||||||||||| |||     
T  17792558 ctaaatttatacattaacaatcaattttatgaaataaatagttatttgtcggcatttata-tctcagaaaatatcatttcataagaaaaacacatcattc 17792460  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     ||||||||| ||||||||  |||         ||||||||| ||||||||||||||||||||||||||| ||||  ||||||||    
T  17792459 attgtttataagaatcata--ataagcttttttacatattattgtataaaataatcaaagttctctattacgagcgataaaaatt 17792377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 6631466 - 6631350
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||| ||||||||||| ||||||||||||||       ||| |||||| ||||||||| ||| |||      
T  6631466 taaatctataaactaacgatcaattttatgaaataattagttatttgtcggcatttatatttt-agaaaatatgatttcagaagaaaaacgcatcattca 6631368  T
Q  340 ttgtttatatgaatcata 357  Q
    ||||||||| ||||||||    
T  6631367 ttgtttataagaatcata 6631350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 36274596 - 36274679
Alignment:
Q  219 tgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||||| |||| ||| || |||||| |||||||||||||| |||||||| ||||||||||||||| || | ||||||||||||    
T  36274596 tgtactggtactcttgcttcctaaatatataaattaacgatcaattttatgaaataaatagttattcgtcgacatttatatttt 36274679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 36672063 - 36672243
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| |||| || |||||||| ||||||||||||| | || ||||||||||||||       ||| |||||| ||||||||| ||| |||      
T  36672063 taaatctataaactaactatcaattttatgaaataaatagttactagtcggcatttatatttt-agaaaatatgatttcagaagaaaaacgcatcattca 36672161  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| ||||||||   ||         ||||| ||||||||||||||||||||||||||  ||||||||  ||||||||    
T  36672162 ttgtttataagaatcata--gtaattttttttacatactatcgtataaaataatcaaagttctccgttatgagcgataaaaatt 36672243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 24377534 - 24377485
Alignment:
Q  374 atattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  24377534 atattatcgtataaaataatcaaagttctctattataagcgataaaaatt 24377485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 413
Target Start/End: Complemental strand, 35588163 - 35588122
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagc 413  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  35588163 acatattatcgtataaaataatcaaaattctctattatgagc 35588122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 302
Target Start/End: Complemental strand, 32238301 - 32238227
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||| ||||||||||||| |||||||||||||| | |||||| ||||||| |||||||||| | | ||||||||||    
T  32238301 tactcttgttttctaaatttataaattaacgatcatttttatgaaataaa-agttatttgtcgacttttatatttt 32238227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 24377712 - 24377593
Alignment:
Q  183 ttttggaaacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagtta 282  Q
    |||||| |||||| || ||||| ||||||| |  | ||||| | |||| ||| ||  ||||| |||||| || | || |||||||| |||||||||||||    
T  24377712 ttttggcaacttcaacgatacactcgtaaattgaggtgtaccggtactcttgcttcataaatttataaactagcaatcaattttatgaaataaatagtta 24377613  T
Q  283 tttgttggcatttatatttt 302  Q
    ||| | ||||||||||||||    
T  24377612 tttatcggcatttatatttt 24377593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 529622 - 529561
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||| ||||||||| || | ||||||| |||||| ||||||||||||  |||||||||||    
T  529622 aaatctttaaattaactattatttttatagaataaagagttatttgttgatatttatatttt 529561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 413
Target Start/End: Complemental strand, 6630908 - 6630879
Alignment:
Q  384 ataaaataatcaaagttctctattatgagc 413  Q
    ||||||||||||||||||||||||||||||    
T  6630908 ataaaataatcaaagttctctattatgagc 6630879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 19718373 - 19718434
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||||||| || | |||||| ||||||| || |||||||||  |||||||||||    
T  19718373 aaatctataaattaactattatttttatgaaataaagagctatttgttgatatttatatttt 19718434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 43049887 - 43049826
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||||||| || | |||||| ||||||| || |||||||||  |||||||||||    
T  43049887 aaatctataaattaactattatttttatgaaataaagagctatttgttgatatttatatttt 43049826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 413
Target Start/End: Original strand, 4114715 - 4114885
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||| | ||||||||||||||       ||| |||||| ||||||||| ||| |||      
T  4114715 taaatctataaactaacgatcaattttatgaaataaatagttatttatcggcatttatatttt-agaaaatataatttcagaagaaaaacgcatcattca 4114813  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagc 413  Q
    ||||||||| ||||||||  |||         ||||||||||||||||||||||||||||||||||||||||||    
T  4114814 ttgtttataagaatcata--ataattttttttacatattatcgtataaaataatcaaagttctctattatgagc 4114885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 239 - 411
Target Start/End: Original strand, 10456099 - 10456267
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||||||||||||||| || |||||||| |||||||||||||||| | ||||||||||||||       |||  | ||||||||||||||||| |||     
T  10456099 ctaaatctataaattaactatcaattttatgaaataaatagttatttatcggcatttatatttt-agaaaatatattctcataagaaaaacacatcattc 10456197  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatga 411  Q
     ||||||||| |||||||| || |         ||||||||||||||| ||||||||||||||||||||||||    
T  10456198 attgtttataagaatcatagtaaa---tttttaacatattatcgtatacaataatcaaagttctctattatga 10456267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 16114517 - 16114697
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| ||| ||||||||||       ||| |||||| ||||||||  ||| |||      
T  16114517 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcctttatatttt-aaaaaatatgatttcagaagaaaaatgcatcattcc 16114615  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| ||||||||   ||         ||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  16114616 ttgtttataagaatcata--gtaattttttttacatattatcgtataaaataatcaaagttctctattaggagcgataaaaatt 16114697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 16637075 - 16637144
Alignment:
Q  233 tgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||| ||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||    
T  16637075 tgtttcctaaatctacaaattaacgattaattttatgaaataaagagttatttgttggcatttatatttt 16637144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 38617781 - 38617959
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    ||||||||||||||||| || |||||||| |||||| ||||||||||| | ||||||| ||||       ||| |||||||||||||||||||| |||      
T  38617781 taaatctataaattaacaattaattttatgaaataa-tagttatttgtcgtcatttatgttttagaaaa-tatcatttcataagaaaaacacatcattca 38617878  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| || |         |||||||||| ||||||||||| |||||| ||||||||||||  ||||||||    
T  38617879 ttgtttatacgaatcatattaaaattttg---acatattatcatataaaataattaaagttatctattatgagcgataaaaatt 38617959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 14947538 - 14947455
Alignment:
Q  219 tgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||||| |||| ||| ||| ||||| |||||| ||||||| |||||||| ||||||||| ||||||||  |||||||||||||    
T  14947538 tgtactggtactcttgctttataaatttataaactaacgatcaattttatgaaataaataattatttgtcagcatttatatttt 14947455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 17821746 - 17821695
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||| |||||||||||||||||||||||||||||||  ||||||||    
T  17821746 acatattatcatataaaataatcaaagttctctattatgagcgataaaaatt 17821695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 33494281 - 33494225
Alignment:
Q  246 tataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||||| |||||||| | ||||| |||||||||| ||||||||||||||    
T  33494281 tataaattaacgatcaattttatgatataaagagttatttgtcggcatttatatttt 33494225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 33494156 - 33494105
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||| |||||||||||| |||||||||||||||  ||||||||    
T  33494156 acatattatcgtaaaaaataatcaaaattctctattatgagcgataaaaatt 33494105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 19203931 - 19203875
Alignment:
Q  231 tttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgt 287  Q
    |||||||| ||| || ||||||||| ||||| |||||| ||||||||||||||||||    
T  19203931 tttgttttgtaattcaataaattaatgataatttttatgaaataaatagttatttgt 19203875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 6438226 - 6438287
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||| ||||||||||| |||| |||||| ||||||| || |||||||||  |||||||||||    
T  6438226 aaatttataaattaactataatttttatgaaataaaaagctatttgttgatatttatatttt 6438287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 423
Target Start/End: Original strand, 16637211 - 16637259
Alignment:
Q  375 tattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||| ||| |||||||||||| |||||||||||||||  ||||||||    
T  16637211 tattattgtaaaaaataatcaaaattctctattatgagcgataaaaatt 16637259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 239 - 413
Target Start/End: Complemental strand, 21970661 - 21970491
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||       ||| ||||||||||||||| | || |||     
T  21970661 ctaaatctataaattaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt-acaaaatatcatttcataagaaaaatatatcattc 21970563  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagc 413  Q
     |||||||||  ||||||| || |         |||||||||| |||||||||||||||||||||||||||||||    
T  21970562 attgtttataaaaatcatagtaaa---tttttaacatattatcatataaaataatcaaagttctctattatgagc 21970491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 29023672 - 29023849
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||| ||||||||  ||| |||      
T  29023672 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt-ggaaaatatgatttcagaagaaaaatgcatcattca 29023770  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| ||            |||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  29023771 ttgtttataagaatcatagta-----attttttcatattattgtataaaataatcaaagttctctattatgagcgataaaaatt 29023849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 31644463 - 31644642
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| |||| || |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||| |||||||||  || |||      
T  31644463 taaatctataaactaacaatcaattttatgaaataaatagttatttgtcggcatttatattttagaaaa-tatgatttcagaagaaaaacgtatcattca 31644561  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    || |||||| |||||||| ||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  31644562 ttatttataagaatcatagta---atttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 31644642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 422
Target Start/End: Complemental strand, 6094017 - 6093826
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaa 326  Q
    |||| ||||||  |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||| ||       ||| |||||| ||||||    
T  6094017 tactcttgtttcataaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatctt-agaaaatatgatttcagaagaaa 6093919  T
Q  327 aacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaat 422  Q
    ||  ||| |||  ||||||||| || ||||||||           ||||||||| |||||||||||||||||||||||||| |||||  |||||||    
T  6093918 aatgcatcattcattgtttataagagtcataata---atttttttacatattattgtataaaataatcaaagttctctattttgagcgataaaaat 6093826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 372 - 423
Target Start/End: Complemental strand, 12782871 - 12782820
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  12782871 acatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 12782820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 411
Target Start/End: Original strand, 18667690 - 18667910
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| ||||||| | || ||||| | |||| ||  || ||||||||||||||||||||| |||||||| | |||||||||||||| | |    
T  18667690 aacttctacggtacactcgtaaattgtggtgtaccggtactcttaattcctaaatctataaattaacgatcaattttatgagataaatagttatttatcg 18667789  T
Q  290 g---catttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtata 386  Q
    |   ||||||||||||       ||| |||| |||| |||||||||| |||  ||||||||| |||| ||| || |         |||||||||||||||    
T  18667790 gcaacatttatatttt-agaaaatatcattttataaaaaaaacacatcattcattgtttataagaattatagtaaa---tttttaacatattatcgtata 18667885  T
Q  387 aaataatcaaagttctctattatga 411  Q
    |||||||||||||| ||||||||||    
T  18667886 aaataatcaaagttatctattatga 18667910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 4979273 - 4979322
Alignment:
Q  374 atattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  4979273 atattatcgtataaaataatcaaagttctctattataagcgataaaaatt 4979322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 4979131 - 4979214
Alignment:
Q  219 tgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||||| || |||| |||  ||||| |||||||||| ||| |||||||| |||||||||||||||| | || |||||||||||    
T  4979131 tgtactggtatttttatttcataaatttataaattaatgatcaattttatgaaataaatagttatttatcggtatttatatttt 4979214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 27109049 - 27109106
Alignment:
Q  230 ttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgt 287  Q
    ||||||||| ||||| |||||||||||||| | |||||| ||||||| ||||||||||    
T  27109049 ttttgttttataaatttataaattaacgatcatttttatgaaataaagagttatttgt 27109106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 27150846 - 27150903
Alignment:
Q  230 ttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgt 287  Q
    ||||||||| ||||| |||||||||||||| | |||||| ||||||| ||||||||||    
T  27150846 ttttgttttataaatttataaattaacgatcatttttatgaaataaagagttatttgt 27150903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Complemental strand, 17010714 - 17010653
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||| ||||||||| || |||||||||  ||||| ||||||||||||  |||||||||||    
T  17010714 aaatctttaaattaactattaattttataggataaagagttatttgttgatatttatatttt 17010653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 187 - 423
Target Start/End: Complemental strand, 36156247 - 36156015
Alignment:
Q  187 ggaaacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttg 286  Q
    ||||||||||||  |||| ||||||| |  | ||||| | |||| ||| ||| |||||||||||| ||||||| |||||||| |||||||||||||||||    
T  36156247 ggaaacttctacagtacactcgtaaattgaggtgtaccggtactcttgctttataaatctataaactaacgatcaattttatgaaataaatagttatttg 36156148  T
Q  287 ttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtata 386  Q
    | ||||||||||||||       ||| |||||| ||||||||  ||| |||  ||||||||| |||||||| ||           |||||| ||||||||    
T  36156147 tcggcatttatatttt-agaaaatatgatttcagaagaaaaatgcatcattcattgtttataagaatcatagta---atttttttacatatcatcgtata 36156052  T
Q  387 aaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||||||||||||||||||||||||  ||||||||    
T  36156051 aaataatcaaagttctctattatgagcgataaaaatt 36156015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 2270837 - 2271016
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||       ||| |||||| ||||||||| ||| |||      
T  2270837 taaatctataaattaacgatcaattttatgaaataaataattatttgtcggcatttatatttt-agaaaatatgatttcagaagaaaaacgcatcattca 2270935  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     |||||||| |||||||| ||           ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  2270936 ctgtttataagaatcatagta---atttttttacatattatcgtataaaataatcaaagttctctattatgagcgataaaaatt 2271016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 413
Target Start/End: Original strand, 10400754 - 10400922
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||       ||| |||||| ||||||||| ||| |||      
T  10400754 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt-agaaaatatgatttcagaagaaaaacgcatcattca 10400852  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagc 413  Q
    ||||||||| |||||||| ||           ||||||||||||||||||||||||||||| ||||||||||||    
T  10400853 ttgtttataagaatcatagta----attttttacatattatcgtataaaataatcaaagttatctattatgagc 10400922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 227 - 408
Target Start/End: Original strand, 10568521 - 10568697
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaa 326  Q
    |||||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||||  ||||||||||||||       ||  |||||||||||||    
T  10568521 tacttttgcttcctaaatctataaattaatgattaattttatgaaataaatagttatttgccggcatttatatttt-aaaaaata-catttcataagaaa 10568618  T
Q  327 aacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctatta 408  Q
    ||||||| |||| ||||||||| |||||||| || |          ||||||||| ||||||||||||||||||||||||||    
T  10568619 aacacattatttattgtttatacgaatcatagtaaatttttgc---catattatcatataaaataatcaaagttctctatta 10568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 201 - 411
Target Start/End: Original strand, 40584877 - 40585083
Alignment:
Q  201 tacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatt 300  Q
    |||| ||||||| |||  ||||| |||||| || |||||||||| |||||||| ||||| |||||||| | |||||||||||||||| ||||||||||||    
T  40584877 tacactcgtaaattatagtgtaccgatactcttattttctaaatttataaattgacgatcaattttatgagataaatagttatttgtcggcatttatatt 40584976  T
Q  301 ttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagtt 400  Q
    ||       ||| |||||||||||||||||||| |||  || ||| || |||||||| || |         | |||||||||||||||||||||||||||    
T  40584977 tt-agaaaatatcatttcataagaaaaacacatcattcattttttgtaagaatcatagtaaa---tttttaaaatattatcgtataaaataatcaaagtt 40585072  T
Q  401 ctctattatga 411  Q
     ||||||||||    
T  40585073 gtctattatga 40585083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 423
Target Start/End: Complemental strand, 17069338 - 17069159
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||||||| |       ||| ||| || ||||||||| ||| |||      
T  17069338 taaatctataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatattat-agaaaatatgattccagaagaaaaacgcatcattca 17069240  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||| |||||||| ||           ||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  17069239 ttgtttataagaatcatagta---atttttttacatattatcgtataaaataatcaaagttctttattatgagcgataaaaatt 17069159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 190 - 409
Target Start/End: Original strand, 13645523 - 13645738
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| ||||||| | || ||||| | |||| ||  || ||||||||||||||||||||| |||||||| |||||||||||||||||| |    
T  13645523 aacttctacattacactcgtaaattgtggtgtaccgttactcttacttcctaaatctataaattaacgatcaattttatgaaataaatagttatttgtcg 13645622  T
Q  290 gcatttatattttnnnnnnntattatttcataagaaaaacacataatttgttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaa 389  Q
    |||||||||| ||        || |||||||||||||||||||| |||  ||||||||| || ||||  || |         ||||||||||||| ||||    
T  13645623 gcatttatatcttagaaaac-atcatttcataagaaaaacacatcattcattgtttataagagtcatggtaaa---attttaacatattatcgtacaaaa 13645718  T
Q  390 taatcaaagttctctattat 409  Q
    || |||||||||||||||||    
T  13645719 tagtcaaagttctctattat 13645738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 239 - 413
Target Start/End: Complemental strand, 32455650 - 32455478
Alignment:
Q  239 ctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataattt 338  Q
    |||||| |||| |||||  || |||||||| |||||||||||||||||| ||||||||||| |        ||| ||||||||||||||||| || |||     
T  32455650 ctaaatttatacattaataatcaattttatgaaataaatagttatttgtcggcatttatatct-cagaaaatatcatttcataagaaaaacatattattc 32455552  T
Q  339 gttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagc 413  Q
     |||||||| |||||||||||  |         ||||||||||||||||||||||||||||||||||||||||||    
T  32455551 attgtttatttgaatcataatg-agttttttttacatattatcgtataaaataatcaaagttctctattatgagc 32455478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 43059538 - 43059717
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    ||||| |||||||||| ||| |||||||| |||||| ||||||||||| ||||||||||| ||       ||| ||||||||||||||||||||||||      
T  43059538 taaatttataaattaatgatcaattttatgaaataattagttatttgtcggcatttatatctt-agaaaatatcatttcataagaaaaacacataattca 43059636  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    |||||| || || ||||| || |         |||||||||  |||||||||||||||||||||||||||||||  ||||||||    
T  43059637 ttgtttgtaagagtcatagtaga---attttaacatattatgatataaaataatcaaagttctctattatgagcgataaaaatt 43059717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 423
Target Start/End: Original strand, 24431853 - 24432032
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatattttnnnnnnntattatttcataagaaaaacacataatttg 339  Q
    ||||| |||||| ||||||| |||||||| |||||||||||||||||| | ||||| ||||||       ||| |||||| ||||||||||||| |||      
T  24431853 taaatttataaactaacgatcaattttatgaaataaatagttatttgtcgacatttctattttagaaaa-tatgatttcagaagaaaaacacatcattca 24431951  T
Q  340 ttgtttatatgaatcataatatannnnnnnnnacatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
     |||||||| |||||||| ||           ||||||||||||||||||||||||| ||||||||||||||||  ||||||||    
T  24431952 ctgtttataagaatcatagta---attttattacatattatcgtataaaataatcaatgttctctattatgagcgataaaaatt 24432032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 39041338 - 39041421
Alignment:
Q  219 tgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||| ||   ||| |||| |||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||    
T  39041338 tgtactgatactctttcattccaaatttataaattaatgatcaattttatgaaataaatagttatttgtcggcatttatatttt 39041421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 1445779 - 1445841
Alignment:
Q  240 taaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    ||||| |||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  1445779 taaatttataaactaacgatcaattttatgaaataaatagttatttgtcggcatttatatttt 1445841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 23258708 - 23258759
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||| ||||||||||||||||||||||||||||  ||||||||    
T  23258708 acatattatcgtaaaaaataatcaaagttctctattatgagcgataaaaatt 23258759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 38354896 - 38354947
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  38354896 acatattatcgtataaaataatcaaagttctctattacgagcgataaaaatt 38354947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 409
Target Start/End: Original strand, 39041487 - 39041524
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattat 409  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  39041487 acatattatcgtataaaataatcaaagttctttattat 39041524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 23258569 - 23258644
Alignment:
Q  227 tacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||  ||| |||||||| ||||||||||| |||||||| ||||||| | |||||| | | ||||||||||||    
T  23258569 tacttttactttataaatctacaaattaacgatcaattttattaaataaagaattatttatcgacatttatatttt 23258644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 33654890 - 33654944
Alignment:
Q  248 taaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||| | |||||| ||||||| |||||||||||| | ||||||||||    
T  33654890 taaattaacgattatttttatgaaataaagagttatttgttgacttttatatttt 33654944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 423
Target Start/End: Original strand, 1445900 - 1445949
Alignment:
Q  374 atattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||| |||||||| ||||||||| |||  ||||||||    
T  1445900 atattatcgtataaaatcatcaaagtcctctattataagcgataaaaatt 1445949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 1490741 - 1490802
Alignment:
Q  241 aaatctataaattaacgataaattttataaaataaatagttatttgttggcatttatatttt 302  Q
    |||||||||||||||  || | |||||| ||||||| |||| ||||||| ||||||||||||    
T  1490741 aaatctataaattaaatatcacttttatgaaataaaaagttttttgttgacatttatatttt 1490802  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 32624523 - 32624482
Alignment:
Q  246 tataaattaacgataaattttataaaataaatagttatttgt 287  Q
    |||||||||||||| | |||||||||||||| ||||||||||    
T  32624523 tataaattaacgatcatttttataaaataaaaagttatttgt 32624482  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 3426015 - 3425975
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  3426015 acatattatcgtaaaaaataatcaatgttctcaattatgag 3425975  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 5359949 - 5359909
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  5359949 acatattatcgtaaaaaataatcaatgttctcaattatgag 5359909  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Complemental strand, 12334530 - 12334490
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    ||||||||||||| ||||||||||| |||||| ||||||||    
T  12334530 acatattatcgtaaaaaataatcaatgttctcaattatgag 12334490  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 21051487 - 21051527
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgag 412  Q
    |||| |||||||| |||||||||||| ||||||||||||||    
T  21051487 acattttatcgtaaaaaataatcaaaattctctattatgag 21051527  T

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Target: scaffold0008 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 45476 - 45365
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| ||||||| |||| ||||| | |||| ||  || ||||||||||||||||||||| |||||||| |||||||||||||||||| |    
T  45476 aacttctacactacactcgtaaattatggtgtaccggtactcttacttactaaatctataaattaacgatcaattttatgaaataaatagttatttgtcg 45377  T
Q  290 gcatttatattt 301  Q
    ||||||||||||    
T  45376 gcatttatattt 45365  T

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Target: scaffold0174 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 32930 - 32818
Alignment:
Q  190 aacttctaccatacattcgtaaactatgatgtactgatacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgttg 289  Q
    |||||||||  |||| ||||||||| || ||||| | |||| ||  ||||||||||||||||||||||||  ||||||| | |||||||||||||||  |    
T  32930 aacttctacggtacactcgtaaactgtggtgtaccggtactcttactttctaaatctataaattaacgatctattttatgagataaatagttatttggcg 32831  T
Q  290 gcatttatatttt 302  Q
    |||||||||||||    
T  32830 gcatttatatttt 32818  T

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Target: scaffold0775 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0775
Description:

Target: scaffold0775; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 372 - 423
Target Start/End: Original strand, 28 - 79
Alignment:
Q  372 acatattatcgtataaaataatcaaagttctctattatgagctttaaaaatt 423  Q
    ||||||||||||||||| ||||||||||||||||||||||||  ||||||||    
T  28 acatattatcgtataaagtaatcaaagttctctattatgagcgataaaaatt 79  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 271009 - 271070
Alignment:
Q  226 atacttttgttttctaaatctataaattaacgataaattttataaaataaatagttatttgt 287  Q
    ||||| ||| ||| ||||| |||||||||||||| | |||||| ||||||| ||||||||||    
T  271009 atactcttgctttataaatttataaattaacgatcatttttatgaaataaagagttatttgt 271070  T

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