View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_11 (Length: 391)
Name: NF2389_low_11
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 92 - 274
Target Start/End: Complemental strand, 34465582 - 34465400
Alignment:
| Q |
92 |
tgacaatagcagcagcgtggcggtggttgtgtgtttgagtgtgatgttgtgggaggagtaaggaggagatgttggctgggaaagtggcgaggaaaggtgg |
191 |
Q |
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| T |
34465582 |
tgacaatagcagcagcgtggcggtggttgtgtgttcgagtgtggtgttgtgggaggagtaaggaggagatgttggctgggaaagtggcgaggaaaggtgg |
34465483 |
T |
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| Q |
192 |
agaaggagggagtggtggtgaatagtaagatgggaagaatggtgtttgtggtggtgaagatgaagagatggaggaaaatggaa |
274 |
Q |
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| T |
34465482 |
agaaggagggagtggtggtgaatagtaagatgggaagaatggtgtttgtggtggtgaagatgaagagatggaggaaaatggaa |
34465400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 34465656 - 34465618
Alignment:
| Q |
18 |
gctgtgacggtggcggtggaaggcgaagacagtggaaat |
56 |
Q |
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| T |
34465656 |
gctgtgacggtggcggtggaaggcgaagacagtggaaat |
34465618 |
T |
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