View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2389_low_18 (Length: 326)

Name: NF2389_low_18
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2389_low_18
NF2389_low_18
[»] chr2 (2 HSPs)
chr2 (1-316)||(42692047-42692362)
chr2 (77-277)||(42689525-42689725)
[»] chr8 (16 HSPs)
chr8 (62-289)||(6262182-6262409)
chr8 (111-299)||(6273440-6273628)
chr8 (67-298)||(6362070-6362301)
chr8 (62-173)||(6389822-6389933)
chr8 (56-171)||(6423091-6423206)
chr8 (62-173)||(7457921-7458032)
chr8 (62-173)||(7470323-7470434)
chr8 (128-173)||(6368906-6368951)
chr8 (62-298)||(6351180-6351416)
chr8 (77-173)||(6456111-6456207)
chr8 (62-173)||(6409071-6409182)
chr8 (111-173)||(6287691-6287753)
chr8 (131-173)||(6320339-6320381)
chr8 (131-173)||(6330801-6330843)
chr8 (113-171)||(6449680-6449738)
chr8 (242-298)||(6287822-6287878)
[»] chr5 (1 HSPs)
chr5 (92-173)||(9606276-9606357)
[»] chr1 (1 HSPs)
chr1 (124-252)||(36926276-36926404)
[»] chr7 (1 HSPs)
chr7 (208-252)||(46709271-46709315)


Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 42692047 - 42692362
Alignment:
Q  1 tgtaattgtcttcaagtatgccttttgtggacttttgactaactcgttgtattccgctgaccctttctcaggcatgaatctcctactgagagttggacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692047 tgtaattgtcttcaagtatgccttttgtggacttttgactagctcgttgtattccgctgaccctttctcaggcatgaatctcctactgagagttggacgg 42692146  T
Q  101 tttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42692147 tttaatattaaacctccgtaggaatactgtccaaaattaacagctgcatgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctctt 42692246  T
Q  201 cacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcctggagttcataatcttgtct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  42692247 cacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcttggagttcagaatcttgtct 42692346  T
Q  301 aagtatgtcatctgtg 316  Q
    ||||||||||||||||    
T  42692347 aagtatgtcatctgtg 42692362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 77 - 277
Target Start/End: Complemental strand, 42689725 - 42689525
Alignment:
Q  77 aatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacag 176  Q
    ||||| ||||||| |||||| |||||||  || ||||| ||||| | ||| ||||||||||||||||||||||| || ||||||||  |||||||||       
T  42689725 aatcttctactgatagttgggcggtttagaataaaaccgccgtaaggatattgtccaaaattaacagctgcgtggagggctgaagccgtccatatgatga 42689626  T
Q  177 tagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccacca 276  Q
    |||||||| |||| || ||||||||| | | ||||| ||| ||||||||||||| || ||||  |||||| |||||   |||||| | ||||||||||||    
T  42689625 tagtgcaagcttcaacaagctcttcaagtgtttgcaacttgggccaccatggcttgtctttcaaatcaccatgacctttctctacaacttctttccacca 42689526  T
Q  277 a 277  Q
    |    
T  42689525 a 42689525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 62 - 289
Target Start/End: Original strand, 6262182 - 6262409
Alignment:
Q  62 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 161  Q
    |||||||||||||| |||| |||||| |||||||||||||||||||| |||||||| || | ||| |||||||||||||||||||| |||||||||||||    
T  6262182 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 6262281  T
Q  162 caatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctac 261  Q
    || ||||||||| | || |||||||||  |  | |||||| |||| |||||| || |||||||||||||||| |||||| ||||| ||||| || |||||    
T  6262282 cagtccatatgataatactgcaaacttgaatcaactcttcgcgagtttgcattttcggccaccatggctcgtctttcttgtcaccatgacccacttctac 6262381  T
Q  262 gagttctttccaccaagcctggagttca 289  Q
     | ||||||||||||||  |||||||||    
T  6262382 aacttctttccaccaagattggagttca 6262409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 299
Target Start/End: Original strand, 6273440 - 6273628
Alignment:
Q  111 aacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctcttcacgagcttg 210  Q
    |||| ||||| | ||| |||||||||||||||||||| ||||| |||||||||||||||||||  |||||||||   || |  | ||||   |||| |||    
T  6273440 aaccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagggtagtgcaagagtcaatcaactctgtgcgagtttg 6273539  T
Q  211 catcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagttctttccaccaagcctggagttcataatcttgtc 299  Q
    |||||||  |||||||    | ||||||   |||||||||||||||||||| |||||||||||  | || ||||||||| |||||||||    
T  6273540 catcttaacccaccatttagcatttttcaagtcaccgtgaccaacctctacaagttctttccaaaatgcttggagttcagaatcttgtc 6273628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 298
Target Start/End: Original strand, 6362070 - 6362301
Alignment:
Q  67 ctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatc 166  Q
    ||||||||||||||| |||||   |||||| ||||| |  ||  | ||||| || | ||| |||||||||||||| ||||| ||||| ||||||||||||    
T  6362070 ctcaggcatgaatcttctacttttagttggtcggttaacgatatatcctccatacggatattgtccaaaattaactgctgcatgaagtgctgaagcaatc 6362169  T
Q  167 catatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctacgagtt 266  Q
    |||||||  || |||||| |||| |  | ||| ||||||| ||||||||||  ||||||||   | || |||   ||||| ||||| |||||||| ||||    
T  6362170 catatgagggtggtgcaagcttcaatcaactcctcacgagtttgcatcttaaaccaccatgtagcattcttcaagtcaccatgaccgacctctacaagtt 6362269  T
Q  267 ctttccaccaagcctggagttcataatcttgt 298  Q
    |||||||  | || ||||||||| ||||||||    
T  6362270 ctttccagaatgcttggagttcagaatcttgt 6362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 6389822 - 6389933
Alignment:
Q  62 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 161  Q
    |||||||||||||||||||| || ||   |||||| ||||| |  ||  | || ||||| | ||| |||||||||||||||||||| ||||| |||||||    
T  6389822 cctttctcaggcatgaatcttctgcttttagttggtcggttaacaatgtatccaccgtacggatattgtccaaaattaacagctgcatgaagtgctgaag 6389921  T
Q  162 caatccatatga 173  Q
    ||||||||||||    
T  6389922 caatccatatga 6389933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 6423091 - 6423206
Alignment:
Q  56 gctgaccctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagag 155  Q
    ||||| ||||||||||||||||||||||| ||   |||||| ||||| |  ||  | ||||| || |  || |||||||||||||||||||| ||||| |    
T  6423091 gctgatcctttctcaggcatgaatctcctgctcttagttggtcggttaaggatgtatcctccatatgggtattgtccaaaattaacagctgcatgaagtg 6423190  T
Q  156 ctgaagcaatccatat 171  Q
    ||||||||||||||||    
T  6423191 ctgaagcaatccatat 6423206  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 7457921 - 7458032
Alignment:
Q  62 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 161  Q
    |||||||||||||||||||| |||||    ||||| ||||| |  ||  | ||||| || | ||| |||||||||||||||||||| ||||| |||||||    
T  7457921 cctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaag 7458020  T
Q  162 caatccatatga 173  Q
    ||||||||||||    
T  7458021 caatccatatga 7458032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 7470323 - 7470434
Alignment:
Q  62 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 161  Q
    |||||||||||||||||||| |||||    ||||| ||||| |  ||  | ||||| || | ||| |||||||||||||||||||| ||||| |||||||    
T  7470323 cctttctcaggcatgaatcttctactttttgttggtcggttaaggatatatcctccatacgcatattgtccaaaattaacagctgcatgaagtgctgaag 7470422  T
Q  162 caatccatatga 173  Q
    ||||||||||||    
T  7470423 caatccatatga 7470434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 6368906 - 6368951
Alignment:
Q  128 tgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 173  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||    
T  6368906 tgtccaaaattaacagctgcatgaagtgctgaagcaatccatatga 6368951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 298
Target Start/End: Original strand, 6351180 - 6351416
Alignment:
Q  62 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 161  Q
    |||||||||||||||||||| |||||    ||||| ||||| |  ||  | ||||| || | ||| ||||| |||||||||||||| ||||| |||||||    
T  6351180 cctttctcaggcatgaatcttctactctttgttggccggttaaggatatatcctccatatggatattgtccgaaattaacagctgcatgaagtgctgaag 6351279  T
Q  162 caatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccaccatggctcgtttttcttatcaccgtgaccaacctctac 261  Q
    |||||||||| |   | ||| || ||||||  | ||||||||| | ||||||||||  ||||||||   | || |||   ||||| ||||||||||||||    
T  6351280 caatccatataaggatggtggaagcttcgatcaactcttcacgggtttgcatcttaaaccaccatgtggcattcttcaggtcaccatgaccaacctctac 6351379  T
Q  262 gagttctttccaccaagcctggagttcataatcttgt 298  Q
     ||||| |||||  | || |||||||||  |||||||    
T  6351380 aagttccttccagaatgcttggagttcagcatcttgt 6351416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 6456111 - 6456207
Alignment:
Q  77 aatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 173  Q
    ||||| ||||| |||||||||||||| |  ||  | ||||| || | |||||||||||| ||||| ||||| ||||||||||||||| |||||||||    
T  6456111 aatcttctactaagagttggacggttcaggatatatcctccataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatga 6456207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 6409071 - 6409182
Alignment:
Q  62 cctttctcaggcatgaatctcctactgagagttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaag 161  Q
    |||||||||||||||||||| |||||   |||||| ||||| |  ||  | || ||||| | ||| |||||||||||||||||||| ||||| |||||||    
T  6409071 cctttctcaggcatgaatcttctacttttagttggtcggttaacaatgtatccaccgtaaggatattgtccaaaattaacagctgcatgaagtgctgaag 6409170  T
Q  162 caatccatatga 173  Q
    | ||||| ||||    
T  6409171 ccatccaaatga 6409182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 6287691 - 6287753
Alignment:
Q  111 aacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 173  Q
    |||| ||||| | ||| ||||||||||||||||| || ||||| || ||||||||||||||||    
T  6287691 aaccaccgtacggatattgtccaaaattaacagccgcatgaagtgccgaagcaatccatatga 6287753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 6320339 - 6320381
Alignment:
Q  131 ccaaaattaacagctgcgtgaagagctgaagcaatccatatga 173  Q
    ||||||||||||||||| ||| | |||||||||||||||||||    
T  6320339 ccaaaattaacagctgcatgatgtgctgaagcaatccatatga 6320381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 6330801 - 6330843
Alignment:
Q  131 ccaaaattaacagctgcgtgaagagctgaagcaatccatatga 173  Q
    ||||||||||||||||| ||| | |||||||||||||||||||    
T  6330801 ccaaaattaacagctgcatgatgtgctgaagcaatccatatga 6330843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 6449680 - 6449738
Alignment:
Q  113 cctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatat 171  Q
    |||||||| | ||| ||||| |||||||||||||| |||||||| |||||| |||||||    
T  6449680 cctccgtaaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatat 6449738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 298
Target Start/End: Original strand, 6287822 - 6287878
Alignment:
Q  242 tcaccgtgaccaacctctacgagttctttccaccaagcctggagttcataatcttgt 298  Q
    ||||||||||| |||||||| |||||||||||  | || ||||||||| ||||||||    
T  6287822 tcaccgtgacctacctctacaagttctttccagaatgcttggagttcagaatcttgt 6287878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 9606357 - 9606276
Alignment:
Q  92 gttggacggtttaatattaaacctccgtaggaatactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatga 173  Q
    |||||||||||||  ||  ||||||| || | ||| |||||||||||||||||||| |||||||| |||||| |||||||||    
T  9606357 gttggacggtttagaatataacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatga 9606276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 252
Target Start/End: Complemental strand, 36926404 - 36926276
Alignment:
Q  124 atactgtccaaaattaacagctgcgtgaagagctgaagcaatccatatgacagtagtgcaaacttcgactagctcttcacgagcttgcatcttaggccac 223  Q
    |||||||||||| || || || || || |||||||||||||||||||| | | ||||||||  ||| |  ||||||||  |||  |||||||| ||||||    
T  36926404 atactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagctcttcgagagtatgcatctttggccac 36926305  T
Q  224 catggctcgtttttcttatcaccgtgacc 252  Q
    || ||||| | |||||| ||||| |||||    
T  36926304 caaggctcatctttcttgtcaccatgacc 36926276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 46709271 - 46709315
Alignment:
Q  208 ttgcatcttaggccaccatggctcgtttttcttatcaccgtgacc 252  Q
    ||||||||| |||||||| |||||||||||||| || ||||||||    
T  46709271 ttgcatctttggccaccaaggctcgtttttcttgtcgccgtgacc 46709315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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