View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_19 (Length: 324)
Name: NF2389_low_19
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 55442087 - 55442386
Alignment:
| Q |
26 |
ctagaaaaattgaaacaacattaaagtttgtttgaataaagttgttacttgattactttgaaatgaaacgtaaattacaaatatatagtgcaaagctata |
125 |
Q |
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| T |
55442087 |
ctagaaaaactgaaacaacattaaagtttgtttgaataaagttgttacttgattactttgaaatgaaacgtaaattacaaatatatagtgcaaagctata |
55442186 |
T |
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| Q |
126 |
cacttgcttgctaaatataaataaactttgcagtaaatcttctctaaacagtaaatatcgcgacctattgnnnnnnnnaccaactgaacaagtatcagtc |
225 |
Q |
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| T |
55442187 |
cacttgcttgctaaatataaataaactttgcagtaaatcttctctaaacagtaaatatcgcgacctattgttttttttaccaactgaacaagtatcagtc |
55442286 |
T |
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| Q |
226 |
taatcattacaataacaaatataaagtaataataactatggt-nnnnnnntatcaatattctaacactactcaagatttttcttgaatattttcaccatt |
324 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55442287 |
taatcattaaaataacaaatataaagtaataataactatggtaaaaaaaatatcaatattctaacactactcaagatttttcttgaatattttcaccatt |
55442386 |
T |
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