View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_2 (Length: 509)
Name: NF2389_low_2
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 42463962 - 42463663
Alignment:
| Q |
17 |
cagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagt |
116 |
Q |
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| T |
42463962 |
cagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagt |
42463863 |
T |
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| Q |
117 |
aagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagtctatagttagctccaagaggaacagctggttttgctcgc |
216 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42463862 |
aagaacatagatcttagatatgttgctgtttaagcagttgctaacaggtatatcaatgagtctatagttagctccaagaggaacagctggttttgctctc |
42463763 |
T |
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| Q |
217 |
ttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacactctgaatgaataatcacattttcattacacttcagtcac |
316 |
Q |
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| T |
42463762 |
ttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacactctgaatgaataatcacattttcattacacttcagtcac |
42463663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 364 - 498
Target Start/End: Complemental strand, 42463615 - 42463482
Alignment:
| Q |
364 |
tttcacatatttcaattcaatctacaagagaaaccaaaaattattttcttctgatagcaattacaatgtagctatgaagcacggatactggacccaacac |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| |||||| |
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| T |
42463615 |
tttcacatatttcaattcaatctacaagagaaaccaaaaattattttcttctgataacaattacattatagctatgaagcacggatactggacacaacac |
42463516 |
T |
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| Q |
464 |
gaacactaacacccccgacatgaacactaacatat |
498 |
Q |
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| T |
42463515 |
gaacactaaca-caccgacacgaacactaacatat |
42463482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 37078027 - 37077761
Alignment:
| Q |
17 |
cagcaagaacctcaacaaaaccttcatttttgtagccaccgaggttgcttgcataagcacgagaaagatgtcgattgagggacgcagaattgaattgagt |
116 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||| | |||||| ||||| ||||| || | || | ||| | ||| || ||||||||||| || |
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| T |
37078027 |
cagcaagaacctcaacgaaaccttcatttttgtaaccacccatgttgctcgcatatgcacgggacaagtgcctattcaaggatgctgaattgaattgtgt |
37077928 |
T |
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| Q |
117 |
aagaacatagatcttcgatatgttgctgtttaagcagttgctaacaggaatatcaatgagtctatagttagctccaagaggaacagctggttttgctcgc |
216 |
Q |
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|| || |||||||| |||||||| ||||||| ||||||||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||| ||| |
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| T |
37077927 |
gaggacgtagatctttgatatgttactgtttaggcagttgctgacagggatatcaatcagcctatagtttgctccaagaggaacagctggttttgcccgc |
37077828 |
T |
|
| Q |
217 |
ttcttggtgagtggatatagacgagtaccagcaccacctccaagtataatgccaagtacactctgaa |
283 |
Q |
| |
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|||||||| | |||||| ||||| || || ||||| |||||||||||||| ||||| |||||||||| |
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| T |
37077827 |
ttcttggtcaatggataaagacgcgtcccggcaccccctccaagtataataccaagcacactctgaa |
37077761 |
T |
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