View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_20 (Length: 308)
Name: NF2389_low_20
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 39 - 294
Target Start/End: Complemental strand, 18759780 - 18759526
Alignment:
| Q |
39 |
tgttgcattcatcatagtcaaataacaagccaattcgttgactcaatttctgatgacttttttaccctaaaaaattgaaatgcattaacaaaaaattctt |
138 |
Q |
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| T |
18759780 |
tgttgcattcatcatagtcaaataacaagccaattcgttgactcaatttctgatgacttttttaccctaaaaaattgaaatgccttaacaaaaaatactt |
18759681 |
T |
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| Q |
139 |
cctcccatcttatttataactnnnnnnnnggcaccacttttcattcagcagtaacatagaagaaacacaaataacaaaccaaaagaaagttgataaaata |
238 |
Q |
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| T |
18759680 |
cctcccatcttatttataactaaaaaaa-ggcaccacttttcattcagcagtaacatagaagaaacacaaataacaaaccaaaagaaacttgataaaaaa |
18759582 |
T |
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| Q |
239 |
tcattatttaatggctagccacatctcaaattctttcattttctttgtcatccttg |
294 |
Q |
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| T |
18759581 |
tcattacttaatggctagccacatctcaaattctttcattttctttgtcatccttg |
18759526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 18751910 - 18751850
Alignment:
| Q |
66 |
agccaattcgttgactcaatttctgatgacttttttaccctaaaaaattgaaatgcattaa |
126 |
Q |
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| T |
18751910 |
agccatttcgttgactcactttctgatgacttttttatcctaaaaaattgaaatgtattaa |
18751850 |
T |
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