View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_22 (Length: 295)
Name: NF2389_low_22
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 38217175 - 38217448
Alignment:
| Q |
5 |
atcttagctttggcacatttttgcttgcccaatgattcaatgccactgtggggcaaagtagaagcttctcaaatacagcgacaaaataaattgtagttct |
104 |
Q |
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| T |
38217175 |
atcttagctttggcacatttttgcttgcccaatgattcaatgccactgtggggcaaagtagaagcttctcaaatacagcgacaaaataaattgtagttct |
38217274 |
T |
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| Q |
105 |
atcctatgtgtcccgggacgtnnnnnnntgagactttactcaaagtgtagtatttgtcagaatcacaatgagtttgacaaaataatatgacacattgtga |
204 |
Q |
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| T |
38217275 |
atcctatgtgtctcgggacgtgaaaaa-tgagactttactcaaagtgtagtatttgtcagaatcacaatgagtttgacaaaataatatgacatattgtga |
38217373 |
T |
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| Q |
205 |
ttctaccaaacttgccaaatcaagcatgcaactaaacgttctatacctcatagcacagttcttcgtgagaactctg |
280 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
38217374 |
ttctaccaaacttgccaaatcaagcatgcaactaaac-ttctataccttatagcacagttcttcgtgagaactctg |
38217448 |
T |
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