View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_27 (Length: 275)
Name: NF2389_low_27
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9684776 - 9684537
Alignment:
| Q |
1 |
agactccacatgatgacatgttagagaattcatattcataatgaaagaataaagtgtagtcatcttctcttcaagaatctttctttttcttttcattgtg |
100 |
Q |
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| T |
9684776 |
agactccacatgatgacatgttagagaattcatattcataatgaaagaataaagtgtagtcatcttctcttcaagaatctttctttttcttttcattgtg |
9684677 |
T |
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| Q |
101 |
aagtaattactatggcttcttccctttaagacctttcaaagcaaaagtgaagaaaaatggttgaaacatgctttgtacattctttcatttatttagcagc |
200 |
Q |
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| T |
9684676 |
aagtaattactatggcttcttccctttaagacctttcaaagcaaaagtgaagaaaaatggttgaaacatgctttgtacattcattcatttatttagcagc |
9684577 |
T |
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| Q |
201 |
tagtgacaataatgaagtgtaggcttgtgaactagtcctt |
240 |
Q |
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| T |
9684576 |
tagtgacaataatgaagtgtaggcttgtgaactagtcctt |
9684537 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 24607178 - 24607137
Alignment:
| Q |
234 |
agtccttacaaatgcaatctaattccattgaaaagcatggtt |
275 |
Q |
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| T |
24607178 |
agtccttacaaatgcaagctaattccattgaaaagcatggtt |
24607137 |
T |
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