View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_28 (Length: 259)
Name: NF2389_low_28
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 34785703 - 34785936
Alignment:
| Q |
10 |
aagaatataccatcattcagacttgtgctgttgcttgctatagcattgctgttagtggtaagattcaaagcctactacatatttatcattttcaacagat |
109 |
Q |
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| T |
34785703 |
aagaaaataccatcattcagacttgtgctgttgcttgctatagcattgctgttagtggtaagattcaaagcctactacatatttatcattttcaacagat |
34785802 |
T |
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| Q |
110 |
acatcttactttccgtcacctaagaaatcaaagacacatacggtagtacgattttataaatcagatcatgtttaagtaaggtcgtttcatacatacatac |
209 |
Q |
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| T |
34785803 |
acatcttactttccgtcgcctaagaaatcaaagatacatacggtagtacgattttataaatcagatcatgtttaagtaaggtcgtttcatacatacatac |
34785902 |
T |
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| Q |
210 |
atacaaacaaatatattatttcttcatacttact |
243 |
Q |
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| T |
34785903 |
atacaaacaaatatattatttcttcatacttact |
34785936 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 42038783 - 42038829
Alignment:
| Q |
16 |
ataccatcattcagacttgtgctgttgcttgctatagcattgctgtt |
62 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
42038783 |
atactatcattcaaacttgtgcagttgcttgctatagcatcgctgtt |
42038829 |
T |
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