View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_29 (Length: 252)
Name: NF2389_low_29
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 6943679 - 6943920
Alignment:
| Q |
1 |
taacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaattctcattatcccataacaatggaaggtagttgtaacggtgtttt |
100 |
Q |
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| T |
6943679 |
taacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaattctcattatcccataacaatggaaggtatttgtaacggtgtttt |
6943778 |
T |
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| Q |
101 |
ttgtctcaaaggtttgtgtttgtataatagttgtgtaaatgagttagccatctttaacccgacaactagagaggtccttcgtatccctcacacctgctac |
200 |
Q |
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| T |
6943779 |
ttgtctcaaaggtttctgttggtataatagttgtgtaaatgagttagccatcttgaacccgacaactagagaggtccatcgtatccctcacacctgctac |
6943878 |
T |
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| Q |
201 |
ctcagtaatggatcatacttgtatggtttcggtgctgatgat |
242 |
Q |
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| T |
6943879 |
ctcagtaatggatcatacttgtatggtttcggtgctgatgat |
6943920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 7475524 - 7475392
Alignment:
| Q |
1 |
taacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaattctcattatcccataacaatggaa------ggtagttgtaacgg |
94 |
Q |
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| T |
7475524 |
taacccttctctcacgtgacaacctaatgcacatcaaatcccccttttccagcaactcccatcaacctataacaattgaatcatatggtagtttcaatgg |
7475425 |
T |
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| Q |
95 |
tgttttttgtctcaaaggtttgtgtttgtataa |
127 |
Q |
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| T |
7475424 |
tgttttctgtctcaaaggtttgtgttggtataa |
7475392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7488364 - 7488311
Alignment:
| Q |
1 |
taacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaaca |
54 |
Q |
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|||| |||||||||||| ||| | |||||||||||||||||| ||||||||||| |
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| T |
7488364 |
taactcttctctcatgtcacaccgtaatacacatcaaatccctcttttccaaca |
7488311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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