View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_35 (Length: 239)
Name: NF2389_low_35
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 55442490 - 55442713
Alignment:
| Q |
1 |
ttccctaatagattgatatttaacatcaatgtgtttggttcttccaagttggagtgaatttttaattatggcaataccatatttgttatgcacccatacg |
100 |
Q |
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| T |
55442490 |
ttccctaatagattgatatttaacatcaatgtgtttggttcttccaagttggactgaatttttaattatggcaataccatatttgttatgcacccatacg |
55442589 |
T |
|
| Q |
101 |
gcaacaactttgtttcaaaatcgtcgcatatttgataaaatcttccttagccaaataatttgtttgttactgctacaacgaaaatatactcagcttcagc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55442590 |
gcaacaactttgtttcaaaattgtcgcatatttgataaaatcttccttagccaaataatttgtttgttactgctacaacgaaaatatactcagcttcagc |
55442689 |
T |
|
| Q |
201 |
tgatgattgggagaccatttcttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
55442690 |
tgatgattgggagaccatttcttg |
55442713 |
T |
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