View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_4 (Length: 464)
Name: NF2389_low_4
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 16948089 - 16947633
Alignment:
| Q |
1 |
attacccttaagcactagtgatgaggtctcaggtttgatcttacttagctgattatagaaacaaaataaacacttgaatcaaaaataaataacgaatgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16948089 |
attacccttaagcactagtgatgaggtctcaggtttgatcttacttagctgattatagaaacaaaataaacacttgaatcaaaaataaataatgaatgta |
16947990 |
T |
|
| Q |
101 |
taaaatgtttaatagttatgaatttggtcccacatacatttcctcaaaggctttctcctgatgttttaagtgctccatcttctcaagaatcatcaccaaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16947989 |
taaa-tgtttaatagttatgaatttggtcccacatacatttcctcaaaggctttctcctgatgttttaagtgctccatcttctcaagaatcatcacaaaa |
16947891 |
T |
|
| Q |
201 |
gcaacatcgtcaacaggaagcagtttcccaattacaaagtcccgttggtttctccgatgacaaagaaagtaccacgacaaatgttgttgaggctcagctt |
300 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16947890 |
gcaacatcttcaacatgaagcagtttcccaattacaaagtcctgttggtttctccgatgacaaagaaagttccacgacaaatgttgttgaggctcagctt |
16947791 |
T |
|
| Q |
301 |
gaacagaaacagctaaactcagttaagaattaactaacttccagaagtcactttctatgtagcaccaacacttcggattaaaggcacgtgtctggttgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16947790 |
gaacagaaacagctaaactcagttaagaattaactaacttccagaagtcactttctatgtagcaccaacacttcggattaaaggcacgtgtctggttgca |
16947691 |
T |
|
| Q |
401 |
aacacctgtcagtgtccgacacgacacggacatcactcactcgttttcttaaattatc |
458 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
16947690 |
aacacctgtcagtgtccgacacgacacggacatcaatcactcgttttcttaaattatc |
16947633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 17018754 - 17018298
Alignment:
| Q |
1 |
attacccttaagcactagtgatgaggtctcaggtttgatcttacttagctgattatagaaacaaaataaacacttgaatcaaaaataaataacgaatgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
17018754 |
attacccttaagcactagtgatgaggtctcaggtttgatcttacttagctgattatagaaacaaaataaacacttgaatcaaaaataaataatgaatgta |
17018655 |
T |
|
| Q |
101 |
taaaatgtttaatagttatgaatttggtcccacatacatttcctcaaaggctttctcctgatgttttaagtgctccatcttctcaagaatcatcaccaaa |
200 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
17018654 |
taaa-tgtttaatagttatgaatttggtcccacatacatttcctcaaaggctttctcctgatgttttaagtgctccatcttctcaagaatcatcacaaaa |
17018556 |
T |
|
| Q |
201 |
gcaacatcgtcaacaggaagcagtttcccaattacaaagtcccgttggtttctccgatgacaaagaaagtaccacgacaaatgttgttgaggctcagctt |
300 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
17018555 |
gcaacatcttcaacatgaagcagtttcccaattacaaagtcctgttggtttctccgatgacaaagaaagttccacgacaaatgttgttgaggctcagctt |
17018456 |
T |
|
| Q |
301 |
gaacagaaacagctaaactcagttaagaattaactaacttccagaagtcactttctatgtagcaccaacacttcggattaaaggcacgtgtctggttgca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17018455 |
gaacagaaacagctaaactcagttaagaattaactaacttccagaagtcactttctatgtagcaccaacacttcggattaaaggcacgtgtctggttgca |
17018356 |
T |
|
| Q |
401 |
aacacctgtcagtgtccgacacgacacggacatcactcactcgttttcttaaattatc |
458 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
17018355 |
aacacctgtcagtgtccgacacgacacggacatcaatcactcgttttcttaaattatc |
17018298 |
T |
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