View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_5 (Length: 457)
Name: NF2389_low_5
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 4 - 441
Target Start/End: Complemental strand, 11049773 - 11049336
Alignment:
| Q |
4 |
tcgaataaaatgttgaagccaaacccttcaataaaaacctagtgtaaggctagattaaatgcatgcattcgtttagatggaatagttactatttcaaaaa |
103 |
Q |
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| T |
11049773 |
tcgaagaatatgttaaagccaaacccttcaataaaaacccagtgtaaggctagattaaatacaagcattcgtttagatggaatagttactatttaaaaaa |
11049674 |
T |
|
| Q |
104 |
ttt-caaaaagtcatcacaaactcgtgtgttctcttcatatataccagtattgaaacgatatatagnnnnnnnnnnnnnnntctgatgtcaatggattct |
202 |
Q |
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| T |
11049673 |
tttacaaaaaggcatcacaaactcgtgtattctctttatatataccagcgttgaaacgatatatagacacacacacacacacctgatgtcaatggattct |
11049574 |
T |
|
| Q |
203 |
gacacacacacaagtatgcatccctttagaagtacaccccccactatataaatactacaactatttgtgactttgtgtttaggtttttaacttccaattt |
302 |
Q |
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| T |
11049573 |
gacacacgcacaagtatgcacccctttagaagtacaccccc-actatataaatactacaactatgtgtgactttgtgtttaggtttttaacttccaattt |
11049475 |
T |
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| Q |
303 |
ccacatttataactctcctttagagatccatccaatgtaagacttccattttttcaattgaccatacactagttttattcagtgtaggattttgtgtttt |
402 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11049474 |
ccacatttataactctcctttagagatccatccaatctgagacttccattttttcaattgaccctacactagttttattcagtgtaggattttgtgtttt |
11049375 |
T |
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| Q |
403 |
ttcttttaactcacaaattcaacacttgttccaacatac |
441 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
11049374 |
gtcttttaactcacaaattcaacacctgttccaacatac |
11049336 |
T |
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