View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2389_low_6 (Length: 452)
Name: NF2389_low_6
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2389_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 30883537 - 30883944
Alignment:
| Q |
1 |
gaagaagaacaagtagagagtgtgtttgttcctttgtgttctgttttttggagctaaaacttctagatagtgatagttattaattacagatcacatactt |
100 |
Q |
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| T |
30883537 |
gaagaagaacaagtagagagtgtgtttgttcctttgtgttctgttttttggagctaaaacttctagatagtgatagtt----attacagatcacacactt |
30883632 |
T |
|
| Q |
101 |
tgttcttatattttcagtaaactcagtttcctcatttaactggagtatgataagttatgtgacaagggttagtgaaaacggattattgaccgcatgcttt |
200 |
Q |
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| T |
30883633 |
tgttcttatattttcagtaaactcagtttcctcatttaactggagtat-----------------ggtttagtgaaaaccgattattgaccgcatgcttt |
30883715 |
T |
|
| Q |
201 |
catcatattagtactactagtactatacaatgcagtttgttgtcaatattaaaaaacaaagtaaaaatagtttgttaaaaatagnnnnnnnnactataaa |
300 |
Q |
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| T |
30883716 |
catcatactag---tactagtactatacaatgcagtttgttgtcaatattaaaaaacaaagtaaaaatagtttgttaaaaatagttttttttactataaa |
30883812 |
T |
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| Q |
301 |
tactaaaaacactatttttcaacacttcagtatgatgtgtaacacactcaattgttgctttcaatcaattagatacaacca-tttatatgtgagttaaga |
399 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
30883813 |
tactaaaaacactatttttcaacacttcagtatga--tgtaacacactcaattgttgctttgaatcaattagatacaaccactttatatgtgagttaaga |
30883910 |
T |
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| Q |
400 |
taagtgttcttgaaaatttgcatcacatggggag |
433 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30883911 |
taagtgttcttgaaaatttgcatcacatggggag |
30883944 |
T |
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