View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2389_low_7 (Length: 450)

Name: NF2389_low_7
Description: NF2389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2389_low_7
NF2389_low_7
[»] chr3 (5 HSPs)
chr3 (13-175)||(35845156-35845306)
chr3 (214-320)||(35845306-35845412)
chr3 (340-436)||(35845400-35845496)
chr3 (351-384)||(8474381-8474414)
chr3 (340-384)||(20125903-20125947)
[»] chr4 (1 HSPs)
chr4 (86-188)||(6847435-6847537)
[»] chr8 (5 HSPs)
chr8 (340-436)||(1032449-1032545)
chr8 (340-385)||(13699189-13699234)
chr8 (340-371)||(24910078-24910109)
chr8 (340-384)||(24909762-24909806)
chr8 (340-384)||(25721726-25721770)
[»] chr7 (1 HSPs)
chr7 (340-381)||(24155245-24155286)
[»] chr2 (1 HSPs)
chr2 (342-383)||(9172105-9172146)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 35845156 - 35845306
Alignment:
Q  13 agagaaatacttgtatagtcataaccttcgcgattcattccagtcaggaaaagacgcagccacgcagtcgaataaatctcaaccatccaatctattacac 112  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||            |||||||||||||||||||||||||||||||||||||||||    
T  35845156 agagaaatatttgtatagtcataaccttcgcgattcactccagtcag------------ccacgcagtcgaataaatctcaaccatccaatctattacac 35845243  T
Q  113 ggttatgatctcacgcttctctattttcccaccataaggacaaaacacaggattgtaaaatgt 175  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35845244 ggttatgatctcacgcttctctattttctcaccataaggacaaaacacaggattgtaaaatgt 35845306  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 214 - 320
Target Start/End: Original strand, 35845306 - 35845412
Alignment:
Q  214 ttaaatgaaactttttgttccaatactcatgttgtggtcaattcatgtgaacccagttaaattctgtcataccaatttactcaagttcatagttattaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||    
T  35845306 ttaaatgaaactttttgttccaatactcatgttgtggtcaattcatgtgaaaccagtcaaattctgtcgtaccaatttactcaagttcatagttattaaa 35845405  T
Q  314 tattttg 320  Q
    |||||||    
T  35845406 tattttg 35845412  T

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Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 340 - 436
Target Start/End: Original strand, 35845400 - 35845496
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaacattgttatatatttggacagtgcttgtttcagattttatgtgtgtatatttacggaggtaaatttt 436  Q
    |||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  35845400 attaaatattttgttatttaatatgcaaaacatctttatatatttcgacagtccttgttccagattttatgtgtgtatatttacggaggtaaatttt 35845496  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 8474381 - 8474414
Alignment:
Q  351 tgttatttaatatgcaaaacattgttatatattt 384  Q
    |||||||||||||||||||||| |||||||||||    
T  8474381 tgttatttaatatgcaaaacatcgttatatattt 8474414  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 20125903 - 20125947
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaacattgttatatattt 384  Q
    ||||||||||||||||||| ||||| |||||| ||| ||||||||    
T  20125903 attaaatattttgttattttatatgtaaaacactgtgatatattt 20125947  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 6847435 - 6847537
Alignment:
Q  86 aaatctcaaccatccaatctattacacggttatgatctcacgcttctctattttcccaccataaggacaaaacacaggattgtaaaatgtgaaaagccaa 185  Q
    |||||||||||||||||| || ||||| ||   |||||  | ||| ||||||||||||||||||||||||||| || |||| ||||| ||||||||||||    
T  6847435 aaatctcaaccatccaatttaatacacagtccagatctagcacttttctattttcccaccataaggacaaaacgcatgattttaaaaagtgaaaagccaa 6847534  T
Q  186 gtt 188  Q
    |||    
T  6847535 gtt 6847537  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 436
Target Start/End: Complemental strand, 1032545 - 1032449
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaacattgttatatatttggacagtgcttgtttcagattttatgtgtgtatatttacggaggtaaatttt 436  Q
    ||||||||||||||||||||||||||||||||  |||||||||||  || |||   |||  |||||||| |||| ||||| ||| ||||||||||||    
T  1032545 attaaatattttgttatttaatatgcaaaacaccgttatatatttcaaccgtgtccgttgtagattttaagtgtttatatatactgaggtaaatttt 1032449  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 385
Target Start/End: Original strand, 13699189 - 13699234
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaacattgttatatatttg 385  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  13699189 attaaatattttgttatttaatatgcaaaacactgttaaatatttg 13699234  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 371
Target Start/End: Original strand, 24910078 - 24910109
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaaca 371  Q
    ||||||||||||||||||||||||||||||||    
T  24910078 attaaatattttgttatttaatatgcaaaaca 24910109  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 24909762 - 24909806
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaacattgttatatattt 384  Q
    ||||||||||||||||||||||||  ||||||  |||||||||||    
T  24909762 attaaatattttgttatttaatatataaaacaccgttatatattt 24909806  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 25721770 - 25721726
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaacattgttatatattt 384  Q
    ||||||||||||||||||| ||||| ||||||  |||||||||||    
T  25721770 attaaatattttgttatttcatatgtaaaacaccgttatatattt 25721726  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 24155245 - 24155286
Alignment:
Q  340 attaaatattttgttatttaatatgcaaaacattgttatata 381  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  24155245 attaaatattttgttattttatatgcaaaacattgttatata 24155286  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 383
Target Start/End: Original strand, 9172105 - 9172146
Alignment:
Q  342 taaatattttgttatttaatatgcaaaacattgttatatatt 383  Q
    ||||||||||||||||| ||| |||||||||||||| |||||    
T  9172105 taaatattttgttattttatacgcaaaacattgttaaatatt 9172146  T

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