View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2390_low_3 (Length: 234)
Name: NF2390_low_3
Description: NF2390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2390_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 5499717 - 5499497
Alignment:
| Q |
1 |
agctctagtatagaaaccagcattgatagaactaccaccacctaaaactcttccccttgcattgaaaactccatcagttgaaacaaaatattgagaagct |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5499717 |
agctctagtatagaaaccagcattgatagagctaccaccacctaaaactcttccccttgcattgaaaactccatcagttgaaacaaaatattgagaagct |
5499618 |
T |
|
| Q |
101 |
gaagttggtgaaaggtctgccaaggtaatgtggaagttctcaagaaatgttacatttggattactgaaaggaacaccacctctttcaagtactaatacac |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5499617 |
gaagttggtgaaaggtctgccaaggtaatatggaagttctcaagaaatgttacatttggattagtgaaaggaacaccacctctttcaagtactaatacac |
5499518 |
T |
|
| Q |
201 |
taaagttttgagataatgttg |
221 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
5499517 |
taaagttttgagataatgttg |
5499497 |
T |
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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 42964324 - 42964511
Alignment:
| Q |
2 |
gctctagtatagaaaccagcattgatagaactaccaccacctaaaactcttccccttgcattgaaaactccatcagttgaaacaaaatattgagaagctg |
101 |
Q |
| |
|
|||||||||||||| |||||||| || || ||||||||||| ||||| ||| | ||||||||||| |||||||| ||||| | || | || ||||||| |
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| T |
42964324 |
gctctagtatagaagccagcattaatggagctaccaccacccaaaacccttgctcttgcattgaacactccatctgttgacaagaagaactgtgaagctg |
42964423 |
T |
|
| Q |
102 |
aagttggtgaaaggtctgccaaggtaatgtggaagttctcaagaaatgttacatttggattactgaaaggaacaccacctctttcaag |
189 |
Q |
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|||||||||||| |||||||| |||||||| ||||| |||||||||| ||||| || || ||||||| || || ||||||||||| |
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| T |
42964424 |
aagttggtgaaatatctgccaaagtaatgtgaaagttgtcaagaaatgacacattggggtttgtgaaaggtactcctcctctttcaag |
42964511 |
T |
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