View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_high_10 (Length: 407)
Name: NF2391_high_10
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 3946992 - 3946737
Alignment:
| Q |
13 |
aatatagtgagggcattacgtttatgttttgacacacaattctctacactttgacttgaatttctcagtcattaacattattcatttttggtcagctcga |
112 |
Q |
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| T |
3946992 |
aatatagtgagggcattacgtttatgttttgacacacaattctctacactttgacttgaatttctcagtcattaacattattcatttttggtcagctcga |
3946893 |
T |
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| Q |
113 |
acttctttgtaccttgtgaataagcacgtttatgagtagagaaccttttatttttcgaaagaaattgaaaggtatgttactatgcttttgagtgcataaa |
212 |
Q |
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| T |
3946892 |
acttctttgtaccttgtgaataagcacgtttatgagtagagaaccttttatttttcgaaagaaattgaaaggtatgttactatgctttcgagtgcataaa |
3946793 |
T |
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| Q |
213 |
agtttacttatatcgtcagtttgagaaatctgtcaataactcaattcgtgccttta |
268 |
Q |
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| T |
3946792 |
agtttacttatatcgtcagtttgagaaatctgtcaataactcaattcgtgccttta |
3946737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 266 - 391
Target Start/End: Complemental strand, 3946662 - 3946537
Alignment:
| Q |
266 |
ttaaatatcttatttattgataaatttatcagttgatcaatgatgaatacaagtgactctatttatacttatgagctcaaataaaatgaagataaaatgg |
365 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3946662 |
ttaaatatcttatttattgataaatttatcaattgatcaatgatgaatacaagtgactctatttatacttatgagctcaaataaaatgaagataaaatgg |
3946563 |
T |
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| Q |
366 |
ataactaactctatttatagaaacat |
391 |
Q |
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| T |
3946562 |
ataactaactctatttatagaaacat |
3946537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 37067900 - 37067961
Alignment:
| Q |
268 |
aaatatcttatttattgataaatttatcagttgatcaatgatgaatacaagtgactctattta |
330 |
Q |
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|||||||| |||||||||||| || |||| ||||| ||| ||||||||||| ||||||||||| |
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| T |
37067900 |
aaatatctcatttattgataacttgatcaattgattaattatgaatacaag-gactctattta |
37067961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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