View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_high_28 (Length: 294)

Name: NF2391_high_28
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_high_28
NF2391_high_28
[»] chr4 (2 HSPs)
chr4 (103-275)||(4097261-4097433)
chr4 (1-80)||(4096104-4096183)
[»] chr7 (2 HSPs)
chr7 (127-218)||(25796814-25796905)
chr7 (2-43)||(25797168-25797209)


Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 103 - 275
Target Start/End: Original strand, 4097261 - 4097433
Alignment:
Q  103 ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4097261 ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg 4097360  T
Q  203 atgcaacaaactacgaatttaacgaagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtagg 275  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||    
T  4097361 atgcaacaaactacgaatttaacgaagagacgggaaagcttgaagtcttcatccctcaggtctgcgaagtagg 4097433  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4096104 - 4096183
Alignment:
Q  1 cggaaccaaatggttggtcaacaaagtaaaaggtttgtatttcctatttccatatgttgctcaaacatttatcttttcaa 80  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  4096104 cggaaccaaatggttggtcaacaaagtaaaaggtttctatttcctatttccatatgttgctcaaacatctatcttttcaa 4096183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 25796905 - 25796814
Alignment:
Q  127 tttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtgatgcaacaaactacga 218  Q
    ||||||||||| ||||| || |||||| |||||||| | |||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  25796905 tttgcaggaaagatgcaaaaaccattaacagagttgctgaaggagtatgatctaccaataggaatctttccccgtgacgcaacaaactacga 25796814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 25797209 - 25797168
Alignment:
Q  2 ggaaccaaatggttggtcaacaaagtaaaaggtttgtatttc 43  Q
    |||||||||||| | ||||||||| |||||||||||||||||    
T  25797209 ggaaccaaatggctcgtcaacaaattaaaaggtttgtatttc 25797168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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