View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_high_32 (Length: 263)

Name: NF2391_high_32
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_high_32
NF2391_high_32
[»] chr2 (2 HSPs)
chr2 (13-80)||(5994937-5995004)
chr2 (204-247)||(5995128-5995171)
[»] chr8 (3 HSPs)
chr8 (39-77)||(1665444-1665482)
chr8 (44-80)||(1887064-1887100)
chr8 (44-80)||(1671535-1671571)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 5994937 - 5995004
Alignment:
Q  13 catcaaaaccagaagttctcttgaccaacaaattcctaagctttttgatatggcaatcaataccctca 80  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  5994937 catcaaaaccagaagttctcttaaccaacaaattccttagctttttgatatggcaatcaataccctca 5995004  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 5995128 - 5995171
Alignment:
Q  204 caccccattttcaatcctcgcaacttcaagctctcacttacatt 247  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  5995128 caccccattttcaatcctctcaacttcaagctctcacttacatt 5995171  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 1665482 - 1665444
Alignment:
Q  39 aacaaattcctaagctttttgatatggcaatcaataccc 77  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  1665482 aacaaattcgtaagctttttgatatggcaatcaataccc 1665444  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 1887064 - 1887100
Alignment:
Q  44 attcctaagctttttgatatggcaatcaataccctca 80  Q
    |||||||||||||||||||||||||| ||||||||||    
T  1887064 attcctaagctttttgatatggcaattaataccctca 1887100  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 1671571 - 1671535
Alignment:
Q  44 attcctaagctttttgatatggcaatcaataccctca 80  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  1671571 attcctaacctttttgatatggcaattaataccctca 1671535  T

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