View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2391_high_4 (Length: 588)

Name: NF2391_high_4
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2391_high_4
NF2391_high_4
[»] chr4 (3 HSPs)
chr4 (10-569)||(51379025-51379584)
chr4 (499-569)||(31944489-31944559)
chr4 (514-560)||(24104672-24104718)
[»] chr6 (4 HSPs)
chr6 (487-569)||(8035480-8035562)
chr6 (499-558)||(12180768-12180827)
chr6 (518-569)||(25340371-25340422)
chr6 (499-569)||(11970833-11970903)
[»] chr8 (6 HSPs)
chr8 (487-569)||(24333575-24333657)
chr8 (515-569)||(27190660-27190714)
chr8 (499-553)||(9256294-9256348)
chr8 (499-569)||(13152626-13152696)
chr8 (501-569)||(14446708-14446776)
chr8 (499-565)||(28846494-28846560)
[»] chr3 (3 HSPs)
chr3 (499-569)||(51261852-51261922)
chr3 (499-569)||(3857108-3857178)
chr3 (521-559)||(15667868-15667906)
[»] chr1 (6 HSPs)
chr1 (499-569)||(30559237-30559307)
chr1 (499-559)||(48606854-48606914)
chr1 (499-569)||(30054738-30054808)
chr1 (499-564)||(9636995-9637060)
chr1 (499-560)||(14498771-14498832)
chr1 (499-555)||(52754030-52754086)
[»] chr7 (6 HSPs)
chr7 (487-570)||(25024444-25024527)
chr7 (487-569)||(5287929-5288011)
chr7 (499-569)||(43727869-43727939)
chr7 (508-569)||(24276460-24276521)
chr7 (501-553)||(9230276-9230328)
chr7 (522-555)||(23180134-23180167)
[»] chr5 (4 HSPs)
chr5 (499-559)||(8785656-8785716)
chr5 (499-569)||(27169027-27169097)
chr5 (487-548)||(11852576-11852637)
chr5 (499-545)||(3055354-3055400)
[»] chr2 (2 HSPs)
chr2 (499-569)||(12539447-12539517)
chr2 (499-569)||(34317699-34317769)
[»] scaffold0178 (1 HSPs)
scaffold0178 (499-570)||(17613-17684)


Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 10 - 569
Target Start/End: Original strand, 51379025 - 51379584
Alignment:
Q  10 aagaatatgagcaataagaacgtcccaatcttcttcatatagggatggaaataaatgttcaacgcatccgttatcaacctaaaatgataaaccagacagg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51379025 aagaaaatgagcaataagaacgtcccaatcttcttcatatagggatggaaataaatgttcaacgcatccgttatcaacctaaaatgataaaccagacagg 51379124  T
Q  110 aagatgcaaaccactactgctcaattaacaggtattgcaaggattaaaaattcagtcgaaagtcaaactcaacacaatataaggcctaccgtatggagat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51379125 aagatgcaaaccactactgctcaattaacaggtattgcaaggattaaaaattcagtcgaaagtcaaactcaacacaatataaggcctaccgtatggagat 51379224  T
Q  210 ctttgacattaaaagaagggtatggataggatctttcaaaatgatgaggaaataactgtgtccatgtatcatcccccatcataacaactttcttcccatt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51379225 ctttgacattaaaagaagggtatggataggatctttcaaaatgatgaggaaataactgtgtccatgtatcatcccccatcataacaactttcttcccatt 51379324  T
Q  310 ttgaaacaactgtaggtaaacagatatgtatttagaataagtattagatttaacttcctagtcggcaattcaaattcagaaatgtagaacaaggaccaat 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51379325 ttgaaacaactgtaggtaaacagatatgtatttagaataagtattagatttaactgcctagtcggcaattcaaattcagaaatgtagaacaaggaccaat 51379424  T
Q  410 ttcagtcttgaactaaacaatgtttcaaatcataaatattagagacaaggaaaaattgaagagaaaaaatcacctggttaatgaagttgtcttcaacaat 509  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51379425 ttcagtcttgaactaaacaatgtttcaaatcataaatattagaggcaaggaaaaattgaagagaaaaaatcacctggttaatgaagttgtcttcaacaat 51379524  T
Q  510 agcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51379525 agcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 51379584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 31944489 - 31944559
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||||||||| ||||||  ||||||||||||||||| ||||||||||||||||||||| ||| ||||    
T  31944489 tcttcaacaatagcgggtgcatgaaagctattaccaacattaacaaaagttggaagtccaccagttatcaa 31944559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 514 - 560
Target Start/End: Complemental strand, 24104718 - 24104672
Alignment:
Q  514 ggtgcaccaaagctattaccaacatcaacaaaagttggaagtccacc 560  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  24104718 ggtgcaccaaagctatcaccaacatcaacaaaagttgaaagtccacc 24104672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 487 - 569
Target Start/End: Complemental strand, 8035562 - 8035480
Alignment:
Q  487 ttaatgaagttgtcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  8035562 ttaatgaagttatcttcaacagtagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccacgagttgtcaa 8035480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 558
Target Start/End: Complemental strand, 12180827 - 12180768
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtcca 558  Q
    |||||||||||||| ||||| |||||| |||||| ||||||||||||||||| |||||||    
T  12180827 tcttcaacaatagcgggtgcgccaaagttattacaaacatcaacaaaagttgaaagtcca 12180768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 518 - 569
Target Start/End: Original strand, 25340371 - 25340422
Alignment:
Q  518 caccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  25340371 caccaaagttattaccaacatcaacaaaagttgaaagtccatcggttgtcaa 25340422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 11970833 - 11970903
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||| |||||| |||||| |||||||||||||||||||| |||||||  |||||||||  ||||||||    
T  11970833 tcttcaaaaatagcgggtgcagcaaagctattaccaacatcagcaaaagtatgaagtccactagttgtcaa 11970903  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 487 - 569
Target Start/End: Original strand, 24333575 - 24333657
Alignment:
Q  487 ttaatgaagttgtcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||| |||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  24333575 ttaacgaagttatcttcgacaatagcaggtgcaccaaaactattaccaacatcaataaaagttggaagtccaccggttgtcaa 24333657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 515 - 569
Target Start/End: Original strand, 27190660 - 27190714
Alignment:
Q  515 gtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27190660 gtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaa 27190714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 499 - 553
Target Start/End: Original strand, 9256294 - 9256348
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaa 553  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  9256294 tcttcaacgatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaa 9256348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 13152696 - 13152626
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||| |||||  |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  13152696 tcttcaataatagagggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaa 13152626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 14446708 - 14446776
Alignment:
Q  501 ttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  14446708 ttcaacaatattgggtacaccaaagctattaccaacatcaacaaaagttggaagtccaccagtagtcaa 14446776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 499 - 565
Target Start/End: Original strand, 28846494 - 28846560
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttg 565  Q
    |||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||| ||| ||||    
T  28846494 tcttcaacaatatcgggtgcaccaaagctataaccaacatcaacaaaagttgtaagtctaccagttg 28846560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 51261852 - 51261922
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51261852 tcttcaacaatagcaggtgcatcaaagctattaccaacatcaacaaaagttggaagtccaccagttgtcaa 51261922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 3857178 - 3857108
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  3857178 tcttcaacaatagcaggtgcaccaaagctattacgaacatcaacaaaagttggaagtccaccagttatcaa 3857108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 521 - 559
Target Start/End: Original strand, 15667868 - 15667906
Alignment:
Q  521 caaagctattaccaacatcaacaaaagttggaagtccac 559  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  15667868 caaacctattaccaacatcaacaaaagttggaagtccac 15667906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 30559307 - 30559237
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30559307 tcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttgaaagtccaccggttgtcaa 30559237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 499 - 559
Target Start/End: Complemental strand, 48606914 - 48606854
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccac 559  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  48606914 tcttcaacaatagcaagtgcaccaaagctattaccaaaatcaacaaaagttggaagtccac 48606854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 30054738 - 30054808
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||||||||| ||||||  ||| | ||||||||||||||||||||||||||||||||||||||||||    
T  30054738 tcttcaacaatagcgggtgcattaaaaccattaccaacatcaacaaaagttggaagtccaccggttgtcaa 30054808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 499 - 564
Target Start/End: Original strand, 9636995 - 9637060
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggtt 564  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  9636995 tcttcaacaatagcgggtgcaccaaagccattactaacatcaacaaaagttgaaagtccaccggtt 9637060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 499 - 560
Target Start/End: Original strand, 14498771 - 14498832
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccacc 560  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  14498771 tcttcaacaatagcgggtgtaccaaagctattatcaacatcaacaaaagttggaagtacacc 14498832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 499 - 555
Target Start/End: Complemental strand, 52754086 - 52754030
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagt 555  Q
    |||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||    
T  52754086 tcttcaacaatagcgggtgcaccaaagctattatcaacattaacaaaagttgaaagt 52754030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 487 - 570
Target Start/End: Original strand, 25024444 - 25024527
Alignment:
Q  487 ttaatgaagttgtcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaat 570  Q
    ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  25024444 ttaatgaagttatcttcaacaatagcggatgcaccaaagctattaccagcatcaacaaaagttggaagtccaccaattgtcaat 25024527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 487 - 569
Target Start/End: Original strand, 5287929 - 5288011
Alignment:
Q  487 ttaatgaagttgtcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||||||  ||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5287929 ttaatgaagtcatcttcaaaaatagcgggtgtaccaaagctattaccatcatcaacaaaagttggaagtccaccggttgtcaa 5288011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 43727869 - 43727939
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||    
T  43727869 tcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtacaccagttatcaa 43727939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 508 - 569
Target Start/End: Complemental strand, 24276521 - 24276460
Alignment:
Q  508 atagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  24276521 atagcgggtgcaccaaagctataaccaacatcaacaaaagttggaagtccaccagttgtcaa 24276460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 501 - 553
Target Start/End: Original strand, 9230276 - 9230328
Alignment:
Q  501 ttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaa 553  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  9230276 ttcaacaatagcgggtgcaccaaagctattatcaacatcaacaaaagttggaa 9230328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 522 - 555
Target Start/End: Complemental strand, 23180167 - 23180134
Alignment:
Q  522 aaagctattaccaacatcaacaaaagttggaagt 555  Q
    ||||||||||||||||||||||||||||||||||    
T  23180167 aaagctattaccaacatcaacaaaagttggaagt 23180134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 499 - 559
Target Start/End: Original strand, 8785656 - 8785716
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccac 559  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8785656 tcttcaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccac 8785716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 27169097 - 27169027
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    ||||||| |||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  27169097 tcttcaataatagcgggtgtaccaaagctattaccaacatcaacaaaagatggaagtccaccagttatcaa 27169027  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 11852576 - 11852637
Alignment:
Q  487 ttaatgaagttgtcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagt 548  Q
    ||||||||||| |||||||||||||  ||||||||||| ||||||| |||||||||||||||    
T  11852576 ttaatgaagttatcttcaacaatagtgggtgcaccaaaactattactaacatcaacaaaagt 11852637  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 499 - 545
Target Start/End: Original strand, 3055354 - 3055400
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaa 545  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||    
T  3055354 tcttcaacaatagcgggtgcaccaaagctattatcaacatcaacaaa 3055400  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 499 - 569
Target Start/End: Original strand, 12539447 - 12539517
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12539447 tctttaacaatagcgggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaa 12539517  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 499 - 569
Target Start/End: Complemental strand, 34317769 - 34317699
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaa 569  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  34317769 tcttcaacaatagcgggtgaaccaaagctattaccaacatcaacaaaagttggaagtccaccagttatcaa 34317699  T

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Target: scaffold0178 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 499 - 570
Target Start/End: Original strand, 17613 - 17684
Alignment:
Q  499 tcttcaacaatagcaggtgcaccaaagctattaccaacatcaacaaaagttggaagtccaccggttgtcaat 570  Q
    |||||||||| ||  ||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||    
T  17613 tcttcaacaaaagtgggtgcaccaaaactattaccaacatcaacaaaagttggaagtccaccagttatcaat 17684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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