View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2391_high_5 (Length: 576)
Name: NF2391_high_5
Description: NF2391
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2391_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 44095640 - 44096189
Alignment:
| Q |
11 |
acgttaaattttcaattttcgctctcagcatataaacgaataatattgatcatgacatgagttagagtaaaatttcttcaagtattggtaatgttatgga |
110 |
Q |
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| T |
44095640 |
acgttaaattttcaattttcactctcagcatataaacgaataatattgatcatgacatgagttagagtaaaatttcttcaagtattggtaatgttatgga |
44095739 |
T |
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| Q |
111 |
ttgagcttttgggttgagccaagcataataccgcatccattaaacatcacactatgacctattaggatatgcttcattttaaacctcttacactcctcaa |
210 |
Q |
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| T |
44095740 |
ttgagcttttgggttgagccaagcataataccgcatccattaaacatcacactatgacctattaggatatgcttcatcttaaacctcttacactcctcaa |
44095839 |
T |
|
| Q |
211 |
atattatactaacctaaacgtaaaattgtttgcatgtagactctcatcatcgatcaccctcttcgacgtgaattatgaccaaacaccatcattcaagaag |
310 |
Q |
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| T |
44095840 |
atattatactaacctaaacgtaaaattgtttgcatgtaggctctcatcatcgatcaccctcttcgacgtgaattatgaccaaacaccatcattcaagaag |
44095939 |
T |
|
| Q |
311 |
cgcttattccactaagttgccatcaccattgtggttctgagttgtgcccctatataaacattggtattatgagaaatattgttgcccctcttaaatattt |
410 |
Q |
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| T |
44095940 |
cgcttattccactaagttgccatcaccattgtggttctgagttgtgcccctatataaacattggtattatgagaaatattgttgcccctcttaaatattt |
44096039 |
T |
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| Q |
411 |
ttccttttaaaataacaagggactaacttgtcccttcaaagatgaaacataccacatgttatttaaatacttggattaagcgacttttttgcttcaaaac |
510 |
Q |
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| T |
44096040 |
ttccttttaaaataacaagggactaacttgtcccttcaaaggtgaaacataccacatgttatttaaatacttggattaagcgac-tttttgcttcaaaac |
44096138 |
T |
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| Q |
511 |
atattcaagttgaatcaccactcttgcaaagcagaaaacgactctaacacc |
561 |
Q |
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| T |
44096139 |
atattcaagttgaatcaccactcttgcaaagcagaaaacgactctaacacc |
44096189 |
T |
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